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[177166_at]

Description Y73B6BL.B /REP_DB=WormBase Gene ID /WP=CE26275 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23461.1
Cluster 6grp_total > 25      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 20.5
(-2.6)
A 		21.2
(-2.6)
A 		13.8
(-3)
A 		126.7
(3)
P 		113
B 49.6
(3)
A 		35.6
(1.3)
A 		1.4
(-3)
A 		20.9
(-0.6)
A 		48
C 30.4
(3)
A 		22.9
(1.3)
A 		4.1
(-3)
A 		24.2
(1.6)
A 		26
avr 33.5
(0.2) 		26.6
(-0.6) 		6.4
(-3) 		57.3
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 14.8
(-1.3)
A 		33.1
(1.4)
A 		43.7
(3)
P 		4.5
(-2.9)
A 		3.7
(-3)
A 		10.7
(-2)
A 		40
B 42.3
(3)
A 		15.2
(-1.1)
A 		3.1
(-3)
A 		7.9
(-2.3)
A 		5.6
(-2.6)
A 		20.6
(-0.3)
A 		39
C 24.1
(0.4)
A 		31.4
(2.5)
A 		12
(-3)
A 		20.3
(-0.7)
A 		33.2
(3)
A 		15.8
(-1.9)
A 		21
avr 27.1
(3) 		26.6
(2.8) 		19.6
(0.2) 		10.9
(-3) 		14.2
(-1.8) 		15.7
(-1.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.4
(-1.5)
A 		4.6
(-2.6)
A 		3.6
(-3)
A 		18.5
(3)
P 		15
B 15.8
(3)
A 		8.8
(0.3)
A 		0.3
(-3)
A 		4.5
(-1.4)
A 		16
C 10.1
(3)
A 		6.6
(0.6)
A 		1.4
(-3)
A 		4.1
(-1.1)
A 		9
avr 11.1
(3) 		6.7
(0.2) 		1.8
(-3) 		9
(1.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.7
(-2.1)
A 		11.8
(3)
A 		9.5
(1.7)
P 		1.1
(-3)
A 		1.1
(-3)
A 		2.6
(-2.2)
A 		11
B 14.7
(3)
A 		5.1
(-1.1)
A 		0.7
(-3)
A 		2.1
(-2.4)
A 		2.3
(-2.3)
A 		7.7
(0)
A 		14
C 8.9
(1.6)
A 		9.6
(2.1)
A 		3.1
(-3)
A 		4.1
(-2.2)
A 		10.7
(3)
A 		5.3
(-1.3)
A 		8
avr 8.8
(3) 		8.8
(3) 		4.4
(-1.1) 		2.4
(-3) 		4.7
(-0.8) 		5.2
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19132
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.B NCBI
Target Description Y73B6BL.B /REP_DB=WormBase Gene ID /WP=CE26275 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23461.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171364(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171364 NCBI Caenorhabditis elegans Y73B6BL.36 (Y73B6BL.36) mRNA, complete cds. 9/11 None
Y73B6BL.36 ENSEMBL cdna:known chromosome:CEL140:IV:6470305:6470896:-1 gene:Y73B6BL.36 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6470310-6473209(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.36
Entrez Gene 260287 Entrez gene
SwissProt Q8MXQ9 EMBL-EBI
WormBase CE29930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM44392 Hypothetical protein Y73B6BL.36 [Caenorhabditis elegans] ref|NP_741426.1| Y73B6BL.36 [Caenorhabditis elegans] 2.0E-76
blast CAE61533 Hypothetical protein CBG05436 [Caenorhabditis briggsae] 3.0E-48
Sequence
Target Sequence 
>C. ELEGANS:177166_AT
tttgaagttcatcagcctcattctcaaatggatatttctgtttctgcattgaattcagaa
tatcatctatctgttgaattatttaatccatctggatcttcaacattcaaaactccaaat
aatggaaaacattattttaaatttcctgaagttgatggaacttttcacgaaattggagat
tttcaattatgtgtctcaagtcgacaagttaggcaatctgttcaggtaaacctgataatt
gtaattcatgaaaagaatgccaataacattgacgtggcatcgaatcttaaaagaattcaa
actaacccttcctatgacgaaacaaaaatgacattgaaaacttttgaacaaatcactctc
aatattgatgtaaaactgaaaataatgaagaccgagcaagcaaagcgagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGAAGTTCATCAGCCTCATTCTC 57 667 295 Antisense
AATGGATATTTCTGTTTCTGCATTG 380 163 321 Antisense
GAATATCATCTATCTGTTGAATTAT 164 327 352 Antisense
ATTTAATCCATCTGGATCTTCAACA 377 15 375 Antisense
GATCTTCAACATTCAAAACTCCAAA 504 419 389 Antisense
GTTGATGGAACTTTTCACGAAATTG 427 435 445 Antisense
TCAAGTCGACAAGTTAGGCAATCTG 586 629 490 Antisense
TAGGCAATCTGTTCAGGTAAACCTG 225 651 504 Antisense
AACATTGACGTGGCATCGAATCTTA 661 137 559 Antisense
TTCAAACTAACCCTTCCTATGACGA 519 683 590 Antisense
GAAGACCGAGCAAGCAAAGCGAGCT 161 339 681 Antisense
Sequence Source Affymetrix Proprietary Database