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[177165_at]

Description Y38F2AL.F /REP_DB=WormBase Gene ID /WP=CE21622 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59476.1
Cluster 6grp_total > 07      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 67.3
(2.6)
A 		13.7
(-3)
A 		47.6
(0.5)
A 		71.6
(3)
A 		58
B 75.6
(3)
A 		4.8
(-3)
A 		24.1
(-1.4)
A 		39
(-0.1)
A 		71
C 97.5
(3)
P 		52.6
(-3)
A 		52.9
(-3)
A 		60.2
(-2)
A 		45
avr 80.1
(3) 		23.7
(-3) 		41.5
(-1.1) 		56.9
(0.5) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 116.1
(3)
A 		67.2
(-1)
A 		43.2
(-3)
A 		79.5
(-0)
A 		60.9
(-1.5)
P 		61.4
(-1.5)
A 		73
B 91
(3)
P 		85
(2.1)
P 		63.7
(-1)
A 		65.1
(-0.8)
A 		50.4
(-3)
A 		61.1
(-1.4)
A 		41
C 109.2
(3)
P 		65.4
(-2)
A 		72.3
(-1.2)
A 		67.4
(-1.8)
A 		56.8
(-3)
A 		58.9
(-2.8)
P 		52
avr 105.4
(3) 		72.5
(-1) 		59.7
(-2.6) 		70.7
(-1.2) 		56
(-3) 		60.5
(-2.5) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 24.5
(3)
A 		3
(-3)
A 		12.4
(-0.4)
A 		10.5
(-0.9)
A 		22
B 24.1
(3)
A 		1.2
(-3)
A 		5.6
(-1.8)
A 		8.3
(-1.1)
A 		23
C 32.3
(3)
P 		15.1
(-1.7)
A 		18.4
(-0.8)
A 		10.2
(-3)
A 		22
avr 27
(3) 		6.4
(-3) 		12.1
(-1.3) 		9.7
(-2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.4
(2)
A 		23.9
(3)
A 		9.4
(-3)
A 		20.2
(1.5)
A 		18.4
(0.7)
P 		14.9
(-0.7)
A 		15
B 31.7
(3)
P 		28.3
(1.7)
P 		15.5
(-3)
A 		17.2
(-2.4)
A 		20.5
(-1.1)
A 		22.8
(-0.3)
A 		16
C 40.5
(3)
P 		20
(-1.6)
A 		18.4
(-1.9)
A 		13.5
(-3)
A 		18.4
(-1.9)
A 		19.7
(-1.6)
P 		27
avr 31.2
(3) 		24.1
(0.5) 		14.4
(-3) 		17
(-2.1) 		19.1
(-1.3) 		19.1
(-1.3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19176
Sequence Type Exemplar sequence
Representative Public ID Y38F2AL.F NCBI
Target Description Y38F2AL.F /REP_DB=WormBase Gene ID /WP=CE21622 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59476.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067785 NCBI Caenorhabditis elegans Y38F2AL.2 (Y38F2AL.2) mRNA, complete cds. 11/11 None
SNAP00000023927 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2304494:2306539:-1 11/11 None
GENEFINDER00000023936 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2299605:2306539:-1 11/11 None
Y38F2AL.2 ENSEMBL cdna:known chromosome:CEL140:IV:2304445:2306539:-1 gene:Y38F2AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2304450-2306545(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38F2AL.2
Entrez Gene 189676 Entrez gene
SwissProt Q9N423 EMBL-EBI
WormBase CE21622 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8437.1.S1_AT similar to Y38F2AL.2 cfa
DROSOPHILA_2:1625411_AT dm
DROSGENOME1:145873_AT dm
HG-U133_PLUS_2:219766_AT hypothetical protein MGC4093 hs
HG-U133A:219766_AT hypothetical protein MGC4093 hs
HG-U133A_2:219766_AT hypothetical protein MGC4093 hs
U133_X3P:G13385567_3P_AT hypothetical protein MGC4093 hs
HG-U95E:76345_R_AT hypothetical protein MGC4093 hs
HG-U133_PLUS_2:229957_AT Hypothetical protein MGC4093 hs
HG-U133B:229957_AT Hypothetical protein MGC4093 hs
U133_X3P:HS.31895.1.A1_3P_AT Hypothetical protein MGC4093 hs
HG-U95B:51210_AT Hypothetical protein MGC4093 hs
MG-U74BV2:108713_AT cDNA sequence BC028440 mm
MG-U74CV2:171557_I_AT cDNA sequence BC028440 mm
MOE430A:1427947_AT cDNA sequence BC028440 mm
MOUSE430A_2:1427947_AT cDNA sequence BC028440 mm
MOUSE430_2:1427947_AT cDNA sequence BC028440 mm
MU19KSUBA:TC15229_AT CDNA sequence BC028440, mRNA (cDNA clone MGC:41256 IMAGE:1265537) mm
RAE230A:1389853_AT Similar to CDNA sequence BC028440 rn
RAT230_2:1389853_AT Similar to CDNA sequence BC028440 rn
RG-U34C:RC_AI227900_AT Similar to CDNA sequence BC028440 rn
Protein Similarities
Method ID Description E-Value
blast NP_500186 Y38F2AL.2 [Caenorhabditis elegans] gb|AAF59476.1| Hypothetical protein Y38F2AL.2 [Caenorhabditis elegans] 1.0E-99
blast NP_500186 Y38F2AL.2 [Caenorhabditis elegans] gb|AAF59476.1| Hypothetical protein Y38F2AL.2 [Caenorhabditis elegans] 1.0E-96
blast CAE70306 Hypothetical protein CBG16827 [Caenorhabditis briggsae] 2.0E-92
blast CAE70306 Hypothetical protein CBG16827 [Caenorhabditis briggsae] 2.0E-90
blast NP_500186 Y38F2AL.2 [Caenorhabditis elegans] gb|AAF59476.1| Hypothetical protein Y38F2AL.2 [Caenorhabditis elegans] 4.0E-76
blast CAE70306 Hypothetical protein CBG16827 [Caenorhabditis briggsae] 7.0E-72
blast AAH73648 MGC82986 protein [Xenopus laevis] 6.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR010796 EMBL-EBI B9 3.6E-65
Sequence
Target Sequence 
>C. ELEGANS:177165_AT
agacagattgtccttcagttttcgaaaatgctcattttgctcatccaatcgatttgcacc
tggcaacttccagtattcaaggttggccccgacttttgctccaaatctggcaccatgaca
actacggtagacaggaaattgctgggtacggtactttgctccttcctacctctcccggga
aacatgttctaacatctggatgctggcgacctaaaggaagttggagggaggaaatgatgc
ataaactggtgggaggaggactgcagctcaccagcctcagcgccctggaggatccgtcga
ttcgcgagaagattgtcagtgtgtcagctggagtcgtcaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAGATTGTCCTTCAGTTTTCGA 64 73 146 Antisense
TGCTCATTTTGCTCATCCAATCGAT 297 581 174 Antisense
ATCGATTTGCACCTGGCAACTTCCA 210 37 193 Antisense
TCCAGTATTCAAGGTTGGCCCCGAC 66 585 214 Antisense
TTGCTCCAAATCTGGCACCATGACA 39 701 241 Antisense
TTGCTGGGTACGGTACTTTGCTCCT 466 665 284 Antisense
TACCTCTCCCGGGAAACATGTTCTA 192 651 312 Antisense
AACATCTGGATGCTGGCGACCTAAA 240 137 336 Antisense
GGTGGGAGGAGGACTGCAGCTCACC 385 499 393 Antisense
CTGGAGGATCCGTCGATTCGCGAGA 277 241 430 Antisense
GTGTGTCAGCTGGAGTCGTCAAATT 531 487 464 Antisense
Sequence Source Affymetrix Proprietary Database