[Home] | [Total List]

[177163_at]

Description Y45G5AM.D /REP_DB=WormBase Gene ID /WP=CE26401 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23361.1
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 71      6grp_total > 72      4grp_total > 62      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 294.3
(3)
P 		264.2
(0.4)
P 		275.2
(1.4)
P 		223.5
(-3)
P 		71
B 306.2
(3)
P 		281.2
(-0.9)
P 		267.6
(-3)
P 		286.8
(-0)
P 		39
C 364.5
(3)
P 		255.9
(-1.1)
P 		336.1
(1.9)
P 		204.7
(-3)
P 		160
avr 321.7
(3) 		267.1
(-0.9) 		293
(0.9) 		238.3
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 188.1
(-2)
P 		373.8
(1.7)
P 		333
(0.9)
P 		439.7
(3)
P 		348.5
(1.2)
P 		135.1
(-3)
P 		305
B 229.7
(-0.6)
P 		349.2
(2.3)
P 		346.4
(2.3)
P 		376.4
(3)
P 		324.2
(1.7)
P 		130.4
(-3)
P 		246
C 167.1
(-1.9)
P 		254.4
(-0.1)
P 		343.8
(1.8)
P 		311.8
(1.1)
P 		404.1
(3)
P 		112.2
(-3)
P 		292
avr 195
(-1.3) 		325.8
(1.8) 		341.1
(2.2) 		376
(3) 		358.9
(2.6) 		125.9
(-3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 107.1
(3)
P 		57.3
(-1)
P 		71.9
(0.2)
P 		32.7
(-3)
P 		74
B 97.6
(3)
P 		69.4
(-1.6)
P 		62
(-2.9)
P 		61.1
(-3)
P 		37
C 120.7
(3)
P 		73.6
(-0.3)
P 		117.1
(2.7)
P 		34.5
(-3)
P 		86
avr 108.5
(3) 		66.8
(-0.8) 		83.7
(0.7) 		42.8
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 34.7
(-2.9)
P 		132.9
(3)
P 		72.5
(-0.6)
P 		111.5
(1.7)
P 		105.2
(1.3)
P 		32.9
(-3)
P 		100
B 79.9
(-0.7)
P 		116.2
(1.9)
P 		84.1
(-0.4)
P 		99.7
(0.7)
P 		131.7
(3)
P 		48.6
(-3)
P 		83
C 61.9
(-1.4)
P 		77.6
(-0.4)
P 		87.5
(0.2)
P 		62.7
(-1.4)
P 		130.8
(3)
P 		37.6
(-3)
P 		93
avr 58.8
(-1.6) 		108.9
(2) 		81.4
(0) 		91.3
(0.7) 		122.6
(3) 		39.7
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19470
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.D NCBI
Target Description Y45G5AM.D /REP_DB=WormBase Gene ID /WP=CE26401 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23361.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071755 NCBI Caenorhabditis elegans Y45G5AM.6 (Y45G5AM.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000024461 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4147520:4150798:-1 11/11 None
Y45G5AM.6 ENSEMBL cdna:known chromosome:CEL140:V:4147426:4152085:-1 gene:Y45G5AM.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024438 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4147519-4152036(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45G5AM.6
Entrez Gene 178815 Entrez gene
SwissProt Q9GUJ2 EMBL-EBI
WormBase CE27407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504156 Y45G5AM.6 [Caenorhabditis elegans] gb|AAG23361.2| Hypothetical protein Y45G5AM.6 [Caenorhabditis elegans] 0.0
blast NP_504156 Y45G5AM.6 [Caenorhabditis elegans] gb|AAG23361.2| Hypothetical protein Y45G5AM.6 [Caenorhabditis elegans] 1.0E-176
blast CAE58333 Hypothetical protein CBG01446 [Caenorhabditis briggsae] 1.0E-172
blast CAE58333 Hypothetical protein CBG01446 [Caenorhabditis briggsae] 1.0E-156
Sequence
Target Sequence 
>C. ELEGANS:177163_AT
gctctgccgttttattacaggggcccagagttgttctactatcggagcaaagtttgtatc
acgttgagcagaggagccggaaaaccacgtagacattgtatttgcaatacagcgaattgc
aacaacgtgtacaatttccagtatattgcaagagaccgggaaaaggaaagtagcttgcgg
tcacgctcgctcacgttaagtgctactgactacacgcttccactgcagacttgttacaat
tgtgagacgaatactcaggatgcaactgcaatgtcgcataccacgaattgcagaagcaac
cggtgtttgggccattattgtacttacgcggctcagcggcacactagtaagagcagtatg
ggcaggtcgaatttggtacacgccgtcagtgagctgcagggttgcatgaatgtttccgac
aagacacatatccaaatcggttgctccaaaaaatggatatccgacgaatacgaagaaatt
cactgtgcatgtcgtggaaatctttgcaatagcgactcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTGCCGTTTTATTACAGGGGCC 429 283 514 Antisense
GGCCCAGAGTTGTTCTACTATCGGA 173 541 535 Antisense
GGAAAGTAGCTTGCGGTCACGCTCG 487 527 678 Antisense
ACGCTCGCTCACGTTAAGTGCTACT 551 87 696 Antisense
TAAGTGCTACTGACTACACGCTTCC 99 637 710 Antisense
CTTCCACTGCAGACTTGTTACAATT 473 219 730 Antisense
GAAGCAACCGGTGTTTGGGCCATTA 191 183 806 Antisense
CATTATTGTACTTACGCGGCTCAGC 586 211 826 Antisense
GCAGGTCGAATTTGGTACACGCCGT 603 309 875 Antisense
ACGCCGTCAGTGAGCTGCAGGGTTG 328 89 893 Antisense
GAAATCTTTGCAATAGCGACTCCTT 317 363 1010 Antisense
Sequence Source Affymetrix Proprietary Database