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[177162_at]

Description Y38F2AL.H /REP_DB=WormBase Gene ID /WP=CE21624 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59478.1
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 706
1 2 3 4 range
A 807.6
(2.9)
P 		816.6
(3)
P 		721.2
(2.1)
P 		202.1
(-3)
P 		615
B 697.9
(1.7)
P 		829.5
(3)
P 		544.3
(0.1)
P 		231.5
(-3)
P 		598
C 782.7
(1.8)
P 		908.3
(3)
P 		756.7
(1.6)
P 		256.1
(-3)
P 		652
avr 762.7
(2.1) 		851.5
(3) 		674.1
(1.3) 		229.9
(-3) 		622

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 733
1 2 3 4 5 6 range
A 955
(3)
P 		610.4
(-0.2)
P 		422.3
(-2)
P 		360.5
(-2.6)
P 		314.5
(-3)
P 		367.1
(-2.5)
P 		641
B 873.3
(3)
P 		621.6
(0.4)
P 		412.9
(-1.8)
P 		409.2
(-1.8)
P 		309.6
(-2.9)
P 		297.4
(-3)
P 		576
C 939
(3)
P 		619.9
(0.3)
P 		447.3
(-1.1)
P 		284.2
(-2.5)
P 		297.2
(-2.4)
P 		221.9
(-3)
P 		717
avr 922.4
(3) 		617.3
(0.1) 		427.5
(-1.7) 		351.3
(-2.5) 		307.1
(-2.9) 		295.5
(-3) 		627
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 294.1
(3)
P 		177.3
(0.4)
P 		188.5
(0.6)
P 		29.6
(-3)
P 		265
B 222.6
(3)
P 		204.9
(2.4)
P 		126.1
(-0.3)
P 		49.3
(-3)
P 		173
C 259.1
(2.9)
P 		261.2
(2.9)
P 		263.7
(3)
P 		43.2
(-3)
P 		221
avr 258.6
(3) 		214.5
(1.8) 		192.8
(1.2) 		40.7
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 176
(1.1)
P 		217.1
(3)
P 		92
(-2.9)
P 		91.4
(-2.9)
P 		94.9
(-2.7)
P 		89.4
(-3)
P 		128
B 303.9
(3)
P 		206.9
(0.1)
P 		100.3
(-3)
P 		108.4
(-2.8)
P 		125.8
(-2.2)
P 		110.9
(-2.7)
P 		204
C 348.1
(3)
P 		189.1
(-0.3)
P 		113.8
(-1.8)
P 		57.2
(-3)
P 		96.2
(-2.2)
P 		74.3
(-2.6)
P 		291
avr 276
(3) 		204.4
(0.7) 		102
(-2.5) 		85.7
(-3) 		105.6
(-2.4) 		91.5
(-2.8) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177162_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19155
Sequence Type Exemplar sequence
Representative Public ID Y38F2AL.H NCBI
Target Description Y38F2AL.H /REP_DB=WormBase Gene ID /WP=CE21624 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59478.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067788 NCBI Caenorhabditis elegans Y38F2AL.1 (Y38F2AL.1) mRNA, complete cds. 11/11 None
SNAP00000023929 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2324063:2326502:1 11/11 None
GENEFINDER00000023932 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2324063:2326502:1 11/11 None
Y38F2AL.1 ENSEMBL cdna:known chromosome:CEL140:IV:2323106:2326657:1 gene:Y38F2AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2322855-2326397(+) 91.48 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38F2AL.1
Entrez Gene 177019 Entrez gene
SwissProt Q9N419 EMBL-EBI
WormBase CE36618 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500189 Y38F2AL.1 [Caenorhabditis elegans] gb|AAF59478.2| Hypothetical protein Y38F2AL.1 [Caenorhabditis elegans] 1.0E-160
blast CAE70301 Hypothetical protein CBG16822 [Caenorhabditis briggsae] 1.0E-141
blast NP_500189 Y38F2AL.1 [Caenorhabditis elegans] gb|AAF59478.2| Hypothetical protein Y38F2AL.1 [Caenorhabditis elegans] 1.0E-141
blast CAE70301 Hypothetical protein CBG16822 [Caenorhabditis briggsae] 1.0E-129
blast AAA81453 Hypothetical protein C24H10.1 [Caenorhabditis elegans] ref|NP_508863.1| C24H10.1 [Caenorhabditis elegans] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 1.2E-126
Pfam IPR010761 EMBL-EBI Clc-like 1.2E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500189.2 5 24-46,59-81,162-184,191-213,244-266
Y38F2AL.1 5 24-46,59-81,162-184,191-213,244-266
SNAP00000023929 4 13-35,114-136,143-165,196-218
GENEFINDER00000023932 4 13-35,114-136,143-165,196-218
Sequence
Target Sequence 
>C. ELEGANS:177162_AT
ggcacaagttctatggctggcacacgtctaccatgatccttctcggattcgctctcctca
ccacgggtctctcgacattcatcggcgcctgcgcatgctgtcactcgtctcttgccctat
tcttcacaataattacattgttgacaactctcctctccgcgattgccgaaggaatcttct
tcttctactcccaccgtgccgacaatcgattcatcaaaggaatcgtgggaacctatgagc
agagagttggaactgcattcttccttcaaatggctgcagctttctgccacttgatctcat
tccttatcgccatgttattcacatacttctcattcgcatcttcaaaggactcggatggtt
tcagcattcagagatccagcaggacgaatgtcactaatattggaagaccagaaaattgca
gatcaatcgaattcgacgccccactcatgtaccctccacagaccccaatttctggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACAAGTTCTATGGCTGGCACAC 645 533 686 Antisense
TTACATTGTTGACAACTCTCCTCTC 619 683 818 Antisense
TCCTCTCCGCGATTGCCGAAGGAAT 431 593 836 Antisense
CACCGTGCCGACAATCGATTCATCA 604 201 877 Antisense
GAACTGCATTCTTCCTTCAAATGGC 117 349 935 Antisense
CAAATGGCTGCAGCTTTCTGCCACT 263 193 952 Antisense
TCTCATTCCTTATCGCCATGTTATT 420 613 980 Antisense
ATACTTCTCATTCGCATCTTCAAAG 84 25 1008 Antisense
GGACTCGGATGGTTTCAGCATTCAG 268 525 1032 Antisense
CAGCATTCAGAGATCCAGCAGGACG 523 203 1047 Antisense
TCCACAGACCCCAATTTCTGGATTC 175 589 1140 Antisense
Sequence Source Affymetrix Proprietary Database