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[177159_at]

Description Y45G5AM.I /REP_DB=WormBase Gene ID /WP=CE26406 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23366.1
Cluster 6grp_total > 87      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 39
(-2.5)
A 		49.7
(0)
A 		36.8
(-3)
A 		62.3
(3)
A 		26
B 25.7
(-3)
A 		79.9
(3)
A 		61.8
(1)
A 		41.2
(-1.3)
A 		54
C 36.3
(-2.1)
A 		79.2
(3)
A 		47.4
(-0.8)
A 		28.5
(-3)
P 		51
avr 33.7
(-3) 		69.6
(3) 		48.7
(-0.5) 		44
(-1.3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 48.5
(-2.7)
A 		38
(-3)
A 		42.2
(-2.9)
A 		80.3
(-1.7)
P 		165.8
(0.9)
P 		234.7
(3)
P 		197
B 21.7
(-3)
A 		46.5
(-2.4)
A 		48.2
(-2.3)
A 		68.4
(-1.8)
P 		115.3
(-0.6)
P 		254.6
(3)
P 		233
C 63.1
(-3)
A 		77
(-2.6)
P 		66.3
(-2.9)
A 		83.7
(-2.4)
A 		159.4
(-0.1)
P 		259.1
(3)
P 		196
avr 44.4
(-3) 		53.8
(-2.7) 		52.2
(-2.8) 		77.5
(-2) 		146.8
(-0) 		249.5
(3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.2
(3)
A 		10.8
(-1)
A 		9.6
(-2.4)
A 		9.1
(-3)
A 		5
B 8.2
(-3)
A 		19.7
(3)
A 		14.3
(0.2)
A 		8.8
(-2.7)
A 		12
C 12
(-0.6)
A 		22.8
(3)
A 		16.5
(0.9)
A 		4.8
(-3)
P 		18
avr 11.5
(-0.7) 		17.8
(3) 		13.5
(0.5) 		7.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 8.9
(-3)
A 		13.5
(-2.4)
A 		9.2
(-3)
A 		20.4
(-1.6)
P 		50
(2.1)
P 		57.1
(3)
P 		48
B 7.6
(-3)
A 		15.5
(-2.5)
A 		11.7
(-2.7)
A 		18.1
(-2.3)
P 		46.8
(-0.3)
P 		94.9
(3)
P 		87
C 23.4
(-2.4)
A 		23.5
(-2.4)
P 		16.9
(-3)
A 		16.8
(-3)
A 		51.6
(-0)
P 		86.7
(3)
P 		70
avr 13.3
(-2.9) 		17.5
(-2.6) 		12.6
(-3) 		18.4
(-2.5) 		49.5
(0.3) 		79.6
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19493
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.I NCBI
Target Description Y45G5AM.I /REP_DB=WormBase Gene ID /WP=CE26406 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23366.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071761 NCBI Caenorhabditis elegans Y45G5AM.2 (Y45G5AM.2) mRNA, complete cds. 11/11 None
SNAP00000024447 ENSEMBL cdna:SNAP chromosome:CEL140:V:4175738:4180963:1 11/11 None
GENEFINDER00000024459 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4175738:4180963:1 11/11 None
Y45G5AM.2 ENSEMBL cdna:known chromosome:CEL140:V:4175701:4181150:1 gene:Y45G5AM.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4175737-4180963(+) 99.25 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45G5AM.2
Entrez Gene 178819 Entrez gene
SwissProt Q9GUI6 EMBL-EBI
WormBase CE31111 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504162 Y45G5AM.2 [Caenorhabditis elegans] gb|AAG23366.3| Hypothetical protein Y45G5AM.2 [Caenorhabditis elegans] 0.0
blast CAE58327 Hypothetical protein CBG01440 [Caenorhabditis briggsae] 0.0
blast NP_491489 W03G9.4 [Caenorhabditis elegans] gb|AAB96739.1| Aminopeptidase p protein 1 [Caenorhabditis elegans] 1.0E-152
Sequence
Target Sequence 
>C. ELEGANS:177159_AT
tacacggacggagcgacgaactgcgcaagaacaatttgggattcatatccaaccgaggaa
ttcatgaatcaatacacgcttgtcctcaagggccatatccgtttagcaagtgcgagcttt
ccgaaaactctcacctatgggagccggctcgacattttcgcaaggattgcactttgggat
gctggattggattatgatcatgaaactgggcatagcgttggccattttttgaatattcgc
gacacacagatagtgataggccgtgaaccatactctagcaatagtataatcgaggctgga
caagtgatgacaattgagccgggatactactccgaaggaatgtatgggattcgaatcggc
aattgctacgagacggtcgatgtcacactgtcgcaaaatgatcagtatttcctacgtttc
gagcccctcacgttgattccaatccaaacttcaatcgtcaacaaggatcttctcacttcc
gaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACGGACGGAGCGACGAACTGCG 183 639 2086 Antisense
TGAATCAATACACGCTTGTCCTCAA 686 575 2150 Antisense
TCCTCAAGGGCCATATCCGTTTAGC 568 269 2168 Antisense
AAGTGCGAGCTTTCCGAAAACTCTC 228 159 2193 Antisense
CACCTATGGGAGCCGGCTCGACATT 282 199 2217 Antisense
GTGATAGGCCGTGAACCATACTCTA 610 481 2338 Antisense
TGAGCCGGGATACTACTCCGAAGGA 296 569 2400 Antisense
CGAGACGGTCGATGTCACACTGTCG 268 251 2454 Antisense
ATCAGTATTTCCTACGTTTCGAGCC 442 29 2486 Antisense
CCCTCACGTTGATTCCAATCCAAAC 21 261 2510 Antisense
CAACAAGGATCTTCTCACTTCCGAA 32 191 2544 Antisense
Sequence Source Affymetrix Proprietary Database