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[177158_at]

Description Y38F2AL.B /REP_DB=WormBase Gene ID /WP=CE21619 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59472.1
Cluster 6grp_total > 05      4grp_total > 05      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 85.1
(-3)
A 		88.6
(-2.8)
A 		132.7
(-0.7)
A 		211.1
(3)
A 		126
B 99.6
(0.8)
A 		16.9
(-3)
A 		49.6
(-1.5)
A 		145.9
(3)
A 		129
C 114.1
(-0.9)
A 		61.2
(-3)
A 		78.2
(-2.3)
A 		208.9
(3)
A 		148
avr 99.6
(-1) 		55.6
(-3) 		86.8
(-1.6) 		188.6
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 94.7
(2.2)
A 		91.4
(1.8)
A 		101.5
(3)
A 		61.8
(-1.8)
A 		69.4
(-0.9)
A 		51.8
(-3)
A 		50
B 83.6
(2.6)
A 		83.3
(2.6)
A 		67.4
(0.9)
A 		31.2
(-3)
A 		87.3
(3)
A 		69
(1)
A 		56
C 95.3
(1.1)
A 		114.2
(3)
A 		53
(-3)
A 		71.1
(-1.2)
A 		72.3
(-1.1)
A 		59.5
(-2.4)
A 		61
avr 91.2
(2.3) 		96.3
(3) 		74
(-0.2) 		54.7
(-3) 		76.3
(0.1) 		60.1
(-2.2) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 31
(1.6)
A 		19.2
(-3)
A 		34.7
(3)
A 		30.9
(1.5)
A 		16
B 31.8
(3)
A 		4.2
(-3)
A 		11.5
(-1.4)
A 		31.1
(2.8)
A 		28
C 37.8
(3)
A 		17.6
(-3)
A 		27.3
(-0.1)
A 		35.2
(2.2)
A 		20
avr 33.5
(3) 		13.7
(-3) 		24.5
(0.3) 		32.4
(2.7) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 17.5
(-1.5)
A 		32.5
(3)
A 		22.1
(-0.1)
A 		15.7
(-2.1)
A 		20.9
(-0.5)
A 		12.6
(-3)
A 		20
B 29.1
(1.6)
A 		27.7
(1.3)
A 		16.4
(-1.2)
A 		8.3
(-3)
A 		35.5
(3)
A 		25.7
(0.8)
A 		27
C 35.3
(3)
A 		34.8
(2.9)
A 		13.5
(-3)
A 		14.3
(-2.8)
A 		23.4
(-0.3)
A 		19.9
(-1.2)
A 		22
avr 27.3
(1.6) 		31.7
(3) 		17.3
(-1.6) 		12.8
(-3) 		26.6
(1.4) 		19.4
(-0.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19261
Sequence Type Exemplar sequence
Representative Public ID Y38F2AL.B NCBI
Target Description Y38F2AL.B /REP_DB=WormBase Gene ID /WP=CE21619 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59472.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067789(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067789 NCBI Caenorhabditis elegans Y38F2AL.5 (Y38F2AL.5) mRNA, complete cds. 10/11 None
GENEFINDER00000023933 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2327165:2328675:-1 10/11 None
Y38F2AL.5 ENSEMBL cdna:known chromosome:CEL140:IV:2327165:2328692:-1 gene:Y38F2AL.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023930 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2327170-2328726(-) 99.74 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-236
Ensembl Y38F2AL.5
Entrez Gene 189677 Entrez gene
SwissProt Q9N418 EMBL-EBI
WormBase CE35076 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500190 Y38F2AL.5 [Caenorhabditis elegans] gb|AAF59472.2| Hypothetical protein Y38F2AL.5 [Caenorhabditis elegans] 1.0E-115
blast CAE70300 Hypothetical protein CBG16821 [Caenorhabditis briggsae] 8.0E-82
blast CAE70300 Hypothetical protein CBG16821 [Caenorhabditis briggsae] 2.0E-79
Sequence
Target Sequence 
>C. ELEGANS:177158_AT
gtttttggcacgatgccgtccaacacgaacgcctgggagcgccgccggagccaaaaccca
cacagacacttattaaagccaaacgaattagaaaacctggaattccggaagtaatcgacc
cgatatccgacccaatcagttgcctatcagctgtgatccgatggtggtcatcacttccac
cagccaacgggttcccagcttccgatcgcaggataatattctcaaattgttggcattcct
tatttttatttcatgttatttgccagtcgggcaccagtttggttaatgattgcaataatg
aaaaactccgatctataagtaagactataaaggctttgaatttaaatgtcgtggagcaat
gggcgattacagtgataattatttacagatcagaagatggacgtttagagtccaaatcgg
aaaccctctccacccaaatcggtgcaatgcaaattctggcggaaaaccacgcggctcgtg
ttttccagtcgcgctctacaagatgtgctcagctgctgctcatcccgttaaccatagctc
aaatcgctgaaactgagattcgtgaagctttttttccagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTGGCACGATGCCGTCCAACA 103 449 155 Antisense
GAAGTAATCGACCCGATATCCGACC 116 335 262 Antisense
AGTTGCCTATCAGCTGTGATCCGAT 322 65 292 Antisense
GATGGTGGTCATCACTTCCACCAGC 71 409 314 Antisense
TCCCAGCTTCCGATCGCAGGATAAT 98 599 347 Antisense
ATTTCATGTTATTTGCCAGTCGGGC 709 13 402 Antisense
GCCAGTCGGGCACCAGTTTGGTTAA 114 273 416 Antisense
CCTCTCCACCCAAATCGGTGCAATG 637 267 579 Antisense
TCGCGCTCTACAAGATGTGCTCAGC 522 599 643 Antisense
TGCTCATCCCGTTAACCATAGCTCA 689 579 671 Antisense
GATTCGTGAAGCTTTTTTTCCAGAT 213 433 711 Antisense
Sequence Source Affymetrix Proprietary Database