[Home] | [Total List]

[177156_at]

Description Y46E12A.D /REP_DB=WormBase Gene ID /WP=CE23405 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60614.1
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 28      6grp_highest_nonorm > 30      6grp_total > 27      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1135
1 2 3 4 range
A 387
(-0.8)
P 		61.9
(-2.8)
A 		24.6
(-3)
A 		1012.7
(3)
P 		988
B 369.8
(-1.2)
P 		78.7
(-2.7)
A 		25.9
(-3)
A 		1159.9
(3)
P 		1134
C 339.3
(-1.1)
P 		56.4
(-2.8)
A 		24.7
(-3)
A 		1011.1
(3)
P 		986
avr 365.4
(-1) 		65.7
(-2.8) 		25.1
(-3) 		1061.2
(3) 		1036

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1358
1 2 3 4 5 6 range
A 1847.1
(3)
P 		863.7
(-1.4)
P 		622.1
(-2.4)
P 		494.1
(-3)
P 		670.9
(-2.2)
P 		828.7
(-1.5)
P 		1353
B 1513.5
(3)
P 		875.3
(-0.7)
P 		489.6
(-3)
P 		624
(-2.2)
P 		660.1
(-2)
P 		829.2
(-1)
P 		1024
C 1505.5
(3)
P 		936.5
(-0.6)
P 		559.7
(-3)
P 		554.6
(-3)
P 		692.4
(-2.1)
P 		1088.4
(0.4)
P 		951
avr 1622
(3) 		891.8
(-1.1) 		557.1
(-3) 		557.6
(-3) 		674.5
(-2.3) 		915.4
(-1) 		1065
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 140.9
(2.7)
P 		13.4
(-2.7)
A 		6.4
(-3)
A 		148.2
(3)
P 		142
B 117.9
(-0.2)
P 		19.4
(-2.7)
A 		6
(-3)
A 		247.2
(3)
P 		241
C 112.3
(0.8)
P 		16.2
(-2.7)
A 		8.6
(-3)
A 		170.5
(3)
P 		162
avr 123.7
(0.9) 		16.3
(-2.7) 		7
(-3) 		188.6
(3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 340.5
(3)
P 		307.2
(2.1)
P 		135.5
(-2.7)
P 		125.3
(-3)
P 		202.5
(-0.8)
P 		201.8
(-0.9)
P 		215
B 526.6
(3)
P 		291.4
(-0.5)
P 		118.9
(-3)
P 		165.3
(-2.3)
P 		268.2
(-0.8)
P 		309.2
(-0.2)
P 		408
C 558
(3)
P 		285.8
(-0.7)
P 		142.5
(-2.6)
P 		111.5
(-3)
P 		224.1
(-1.5)
P 		364.4
(0.4)
P 		447
avr 475
(3) 		294.8
(-0.2) 		132.3
(-3) 		134
(-3) 		231.6
(-1.3) 		291.8
(-0.2) 		343
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19072
Sequence Type Exemplar sequence
Representative Public ID Y46E12A.D NCBI
Target Description Y46E12A.D /REP_DB=WormBase Gene ID /WP=CE23405 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60614.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065054(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065054 NCBI Caenorhabditis elegans CaeNaCin (Caenorhabditis bacteriocin) family member (cnc-6) (cnc-6) mRNA, complete cds. 10/11 None
GENEFINDER00000016687 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1763513:1764728:1 10/11 None
Y46E12A.1 ENSEMBL cdna:known chromosome:CEL140:III:1763513:1764825:1 gene:Y46E12A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1763512-1764728(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cnc-6
Ensembl Y46E12A.1
Entrez Gene 175324 Entrez gene
SwissProt Q9N3V6 EMBL-EBI
WormBase CE26996 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60614 Caenacin (caenorhabditis bacteriocin) protein 6 [Caenorhabditis elegans] ref|NP_497455.1| CaeNaCin (Caenorhabditis bacteriocin) family member (cnc-6) [Caenorhabditis elegans] 3.0E-24
Sequence
Target Sequence 
>C. ELEGANS:177156_AT
atgaggtctacaagccttcttatcttattattctgcattttagctaccgtatttagtgct
ccaaaggctccggagcgaggccagttggctcaagctgagcaagtgcagggaccttatgat
gtagagcttgatggagctgatgaagagcttcaaaatgacacccatattgcccggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGTCTACAAGCCTTCTTATCT 666 45 13 Antisense
GGTCTACAAGCCTTCTTATCTTATT 639 501 17 Antisense
CTTATCTTATTATTCTGCATTTTAG 45 223 31 Antisense
ATTCTGCATTTTAGCTACCGTATTT 558 9 42 Antisense
TTAGCTACCGTATTTAGTGCTCCAA 526 677 52 Antisense
CGTATTTAGTGCTCCAAAGGCTCCG 401 245 60 Antisense
CAAAGGCTCCGGAGCGAGGCCAGTT 320 191 74 Antisense
GGAGCGAGGCCAGTTGGCTCAAGCT 470 521 84 Antisense
GAGGCCAGTTGGCTCAAGCTGAGCA 532 405 89 Antisense
AAGCTGAGCAAGTGCAGGGACCTTA 441 149 104 Antisense
AAAATGACACCCATATTGCCCGGTT 642 127 164 Antisense
Sequence Source Affymetrix Proprietary Database