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[177155_at]

Description Y38C1AA.E /REP_DB=WormBase Gene ID /WP=CE25246 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59466.1
Cluster 6grp_high1_10_10 > 52      4grp_high_8_8 > 26      6grp_total > 52      4grp_total > 47      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 139.6
(3)
P 		46.9
(-2.7)
A 		58.6
(-2)
A 		42.5
(-3)
A 		97
B 96.3
(3)
P 		90.4
(2.2)
P 		62.1
(-1.9)
P 		54.4
(-3)
A 		42
C 108.2
(3)
P 		48.1
(-3)
A 		79.6
(0.1)
A 		96.1
(1.8)
P 		60
avr 114.7
(3) 		61.8
(-3) 		66.8
(-2.4) 		64.3
(-2.7) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 115.6
(2.4)
A 		95.9
(0.8)
P 		122.4
(3)
P 		97.6
(0.9)
P 		76.1
(-0.8)
A 		50.2
(-3)
A 		72
B 72.5
(-3)
A 		122.4
(-0.1)
P 		177.4
(3)
P 		99.1
(-1.5)
P 		85.8
(-2.2)
P 		72.1
(-3)
P 		105
C 64.5
(-2.4)
P 		121.1
(1.9)
P 		135.2
(3)
P 		133.4
(2.9)
P 		72.7
(-1.7)
P 		56.1
(-3)
P 		79
avr 84.2
(-1.3) 		113.1
(0.8) 		145
(3) 		110
(0.5) 		78.2
(-1.7) 		59.5
(-3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 50.8
(3)
P 		10.2
(-2.5)
A 		15.3
(-1.8)
A 		6.2
(-3)
A 		45
B 30.7
(3)
P 		22.3
(0.4)
P 		14.4
(-2.1)
P 		11.6
(-3)
A 		19
C 35.8
(3)
P 		13.8
(-3)
A 		27.7
(0.8)
A 		16.2
(-2.3)
P 		22
avr 39.1
(3) 		15.4
(-2.1) 		19.1
(-1.3) 		11.3
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.3
(-0.5)
A 		34.1
(3)
P 		26.6
(0.9)
P 		24.7
(0.4)
P 		22.9
(-0.1)
A 		12.2
(-3)
A 		22
B 25.2
(-3)
A 		40.7
(2.2)
P 		43.1
(3)
P 		26.3
(-2.6)
P 		34.8
(0.2)
P 		26.9
(-2.4)
P 		18
C 23.9
(-1.3)
P 		36.9
(3)
P 		34.4
(2.2)
P 		26.8
(-0.3)
P 		23.5
(-1.4)
P 		18.8
(-3)
P 		18
avr 23.5
(-1.6) 		37.2
(3) 		34.7
(2.2) 		25.9
(-0.8) 		27.1
(-0.4) 		19.3
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19242
Sequence Type Exemplar sequence
Representative Public ID Y38C1AA.E NCBI
Target Description Y38C1AA.E /REP_DB=WormBase Gene ID /WP=CE25246 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59466.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067472 NCBI Caenorhabditis elegans Y38C1AA.6 (Y38C1AA.6) mRNA, complete cds. 11/11 None
SNAP00000038642 ENSEMBL cdna:SNAP chromosome:CEL140:IV:163742:164592:1 11/11 None
GENEFINDER00000038657 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:162852:164592:1 11/11 None
Y38C1AA.6 ENSEMBL cdna:known chromosome:CEL140:IV:161121:164814:1 gene:Y38C1AA.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:161120-164592(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38C1AA.6
Entrez Gene 189640 Entrez gene
SwissProt Q9N430 EMBL-EBI
WormBase CE25246 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59466 Hypothetical protein Y38C1AA.6 [Caenorhabditis elegans] ref|NP_499873.1| Y38C1AA.6 [Caenorhabditis elegans] 0.0
blast AAF59466 Hypothetical protein Y38C1AA.6 [Caenorhabditis elegans] ref|NP_499873.1| Y38C1AA.6 [Caenorhabditis elegans] 1.0E-143
blast CAE74121 Hypothetical protein CBG21784 [Caenorhabditis briggsae] 4.0E-36
blast CAE74121 Hypothetical protein CBG21784 [Caenorhabditis briggsae] 6.0E-36
blast CAB05176 Hypothetical protein F23B2.10 [Caenorhabditis elegans] ref|NP_501597.1| F23B2.10 [Caenorhabditis elegans] 3.0E-35
blast CAB05176 Hypothetical protein F23B2.10 [Caenorhabditis elegans] ref|NP_501597.1| F23B2.10 [Caenorhabditis elegans] 5.0E-35
Sequence
Target Sequence 
>C. ELEGANS:177155_AT
atgtctcaagactcgtcgactgactatccggatagctcggcgttgcaagtattaagcacc
ggaatgtgtgcggattgttgtattgatggggctcataaggaacatgaaatcaccccgata
aagcaatttgtttcattattgagacggtttgagaacttaaacacattgtcagccatctcc
cttgacttgctgactccatacaatgatcttgaagacaaatcagacctagaagttatgaat
ctgtatttgaaactggttgaaaaaatagttttcaaatttcaagaatggattgacaacgct
tttcaaggatcagtacaaactgatgcaacgagagttgcaatgaagcgatcaacggaaaga
cttcattactttgttcaaaaatgcaacccagtaataattcaatgtgtatccgaaattcta
gaatctgctagtgaaaaagatcaaaaggagtggcaggaaatcaatcagaaactcgaagaa
taccagaatactgtatcttcagcagataagtatactgaactaggtgccagagatttccaa
cttattgacacggtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCAAGACTCGTCGACTGACT 672 47 778 Antisense
CTCGTCGACTGACTATCCGGATAGC 203 233 789 Antisense
GGATAGCTCGGCGTTGCAAGTATTA 597 509 807 Antisense
CACCGGAATGTGTGCGGATTGTTGT 443 201 834 Antisense
GCGGATTGTTGTATTGATGGGGCTC 313 293 847 Antisense
GAACATGAAATCACCCCGATAAAGC 148 351 877 Antisense
TTAAACACATTGTCAGCCATCTCCC 69 685 934 Antisense
CCTTGACTTGCTGACTCCATACAAT 468 269 957 Antisense
GACAACGCTTTTCAAGGATCAGTAC 668 359 1069 Antisense
ACTAGGTGCCAGAGATTTCCAACTT 555 101 1296 Antisense
GATTTCCAACTTATTGACACGGTGT 454 427 1309 Antisense
Sequence Source Affymetrix Proprietary Database