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[177153_at]

Description Y46E12A.C /REP_DB=WormBase Gene ID /WP=CE23404 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60613.1
Cluster 6grp_total > 13      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 39.1
(-0.4)
A 		46.5
(0.3)
A 		12.7
(-3)
A 		74.4
(3)
A 		62
B 57.6
(-1)
A 		113.4
(3)
A 		29.9
(-3)
A 		52.4
(-1.4)
A 		84
C 34.8
(0.5)
A 		49.7
(3)
A 		29.6
(-0.3)
A 		13.3
(-3)
A 		36
avr 43.8
(-0.4) 		69.9
(3) 		24.1
(-3) 		46.7
(-0) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 38.2
(1.1)
A 		27.1
(-0.4)
A 		7.6
(-3)
A 		52
(3)
A 		15.2
(-2)
A 		20.5
(-1.3)
A 		44
B 60.7
(1.3)
A 		82.3
(3)
A 		39
(-0.3)
A 		16
(-2.1)
A 		19.3
(-1.8)
A 		4
(-3)
A 		78
C 25.5
(0.8)
A 		33
(2.2)
A 		36.8
(3)
A 		26.5
(1)
A 		17.1
(-0.9)
A 		6.6
(-3)
A 		30
avr 41.5
(2) 		47.5
(3) 		27.8
(-0.2) 		31.5
(0.4) 		17.2
(-1.9) 		10.4
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 14.2
(3)
A 		10.1
(0.7)
A 		3.3
(-3)
A 		10.9
(1.2)
A 		11
B 18.4
(0.3)
A 		28
(3)
A 		6.9
(-3)
A 		11.2
(-1.8)
A 		21
C 11.5
(1.6)
A 		14.3
(3)
A 		10.3
(1)
A 		2.3
(-3)
A 		12
avr 14.7
(1.4) 		17.5
(3) 		6.8
(-3) 		8.1
(-2.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7
(-0.2)
A 		9.6
(1.1)
A 		1.7
(-3)
A 		13.2
(3)
A 		4.6
(-1.5)
A 		5
(-1.3)
A 		12
B 21.1
(1.5)
A 		27.4
(3)
A 		9.5
(-1.1)
A 		4.2
(-2.4)
A 		7.8
(-1.5)
A 		1.5
(-3)
A 		26
C 9.5
(2.5)
A 		10.1
(3)
A 		9.4
(2.5)
A 		5.3
(-0.6)
A 		5.5
(-0.5)
A 		2.2
(-3)
A 		8
avr 12.5
(1.5) 		15.7
(3) 		6.9
(-1.1) 		7.6
(-0.8) 		6
(-1.5) 		2.9
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19013
Sequence Type Exemplar sequence
Representative Public ID Y46E12A.C NCBI
Target Description Y46E12A.C /REP_DB=WormBase Gene ID /WP=CE23404 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60613.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065053(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065053 NCBI Caenorhabditis elegans Y46E12A.2 (Y46E12A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000016686 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1758954:1759785:1 10/11 None
Y46E12A.2 ENSEMBL cdna:known chromosome:CEL140:III:1758710:1759772:1 gene:Y46E12A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1758709-1759772(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46E12A.2
Entrez Gene 189954 Entrez gene
SwissProt Q9N3V7 EMBL-EBI
WormBase CE23404 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60613 Hypothetical protein Y46E12A.2 [Caenorhabditis elegans] ref|NP_497454.1| Y46E12A.2 [Caenorhabditis elegans] 9.0E-90
blast AAF60613 Hypothetical protein Y46E12A.2 [Caenorhabditis elegans] ref|NP_497454.1| Y46E12A.2 [Caenorhabditis elegans] 7.0E-54
Sequence
Target Sequence 
>C. ELEGANS:177153_AT
tcgctgttcagcagacacgtttgttttgagatgaagatcccagtacgggccgttggacgt
tggacggaatattctccaaccgtaggatctcactggattgagctacggacgattatgtat
tatattgcttcagcccacagtcaacaaggcagatcacaggaagtgcccattcgttggatt
gaagagcacccccgaacaagtcgggacgccgagatgacatcgcgactgcaatcatcgcgt
ctctccggacccatggaagagaagaaaagacgaagttttgggaacattgctcgaaaccgc
tcggtccgtaaactacgaagcctattcgtcgcagtgctgacgtttctccccacgtcagac
accatcgagaagtcaccatgtgccatcgccgagcggactcacgccgtacaatacgaggaa
cacaccatccgaggaacgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGTTCAGCAGACACGTTTGTT 463 599 34 Antisense
AGATCCCAGTACGGGCCGTTGGACG 294 65 68 Antisense
ATTCTCCAACCGTAGGATCTCACTG 414 9 104 Antisense
GCTTCAGCCCACAGTCAACAAGGCA 625 305 160 Antisense
GACGCCGAGATGACATCGCGACTGC 405 381 238 Antisense
CGCGACTGCAATCATCGCGTCTCTC 572 247 254 Antisense
CGTCTCTCCGGACCCATGGAAGAGA 692 245 271 Antisense
TTGGGAACATTGCTCGAAACCGCTC 408 689 311 Antisense
TTCGTCGCAGTGCTGACGTTTCTCC 587 691 358 Antisense
TCGAGAAGTCACCATGTGCCATCGC 86 603 398 Antisense
GGAACACACCATCCGAGGAACGATC 212 529 450 Antisense
Sequence Source Affymetrix Proprietary Database