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[177152_at]

Description Y45G5AM.H /REP_DB=WormBase Gene ID /WP=CE26405 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23365.1
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 23      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 385.4
(3)
P 		254.6
(-1)
P 		315
(0.8)
P 		190.1
(-3)
P 		195
B 528.3
(3)
P 		256.3
(-1.6)
P 		253.7
(-1.6)
P 		171.1
(-3)
P 		357
C 456.9
(3)
P 		213.1
(-2)
P 		188.5
(-2.5)
P 		162.3
(-3)
P 		295
avr 456.9
(3) 		241.3
(-1.6) 		252.4
(-1.3) 		174.5
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 594.1
(3)
P 		314.4
(-1.2)
P 		398.8
(0)
P 		283.1
(-1.7)
P 		260.8
(-2.1)
P 		198.9
(-3)
P 		395
B 388.9
(1.3)
P 		340.6
(0.5)
P 		490.1
(3)
P 		361.2
(0.8)
P 		272.8
(-0.6)
P 		130.5
(-3)
P 		360
C 460
(2.1)
P 		513
(3)
P 		391.6
(1)
P 		316
(-0.3)
P 		151.1
(-3)
P 		240.6
(-1.5)
P 		362
avr 481
(3) 		389.3
(1.1) 		426.8
(1.9) 		320.1
(-0.3) 		228.2
(-2.2) 		190
(-3) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 140.3
(3)
P 		55.3
(-1.5)
P 		82.3
(-0.1)
P 		27.8
(-3)
P 		113
B 168.5
(3)
P 		63.3
(-1.8)
P 		58.8
(-2)
P 		36.5
(-3)
P 		132
C 151.2
(3)
P 		61.3
(-1.4)
P 		65.7
(-1.1)
P 		27.4
(-3)
P 		124
avr 153.3
(3) 		60
(-1.6) 		68.9
(-1.1) 		30.6
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 109.5
(2.8)
P 		111.8
(3)
P 		86.9
(0.6)
P 		71.8
(-0.8)
P 		78.7
(-0.1)
P 		48.4
(-3)
P 		63
B 135.3
(3)
P 		113.4
(1.5)
P 		119
(1.9)
P 		95.7
(0.3)
P 		110.8
(1.3)
P 		48.7
(-3)
P 		87
C 170.5
(3)
P 		156.5
(2.3)
P 		99.7
(-0.5)
P 		63.5
(-2.3)
P 		48.9
(-3)
P 		80.5
(-1.4)
P 		122
avr 138.4
(3) 		127.2
(2.2) 		101.9
(0.2) 		77
(-1.7) 		79.5
(-1.5) 		59.2
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19486
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.H NCBI
Target Description Y45G5AM.H /REP_DB=WormBase Gene ID /WP=CE26405 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23365.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071758 NCBI Caenorhabditis elegans Y45G5AM.3 (Y45G5AM.3) mRNA, complete cds. 11/11 None
SNAP00000024443 ENSEMBL cdna:SNAP chromosome:CEL140:V:4164522:4166572:1 11/11 None
GENEFINDER00000024460 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4164658:4166572:1 11/11 None
Y45G5AM.3 ENSEMBL cdna:known chromosome:CEL140:V:4164658:4166572:1 gene:Y45G5AM.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4164657-4166572(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45G5AM.3
Entrez Gene 189928 Entrez gene
SwissProt Q9GUI8 EMBL-EBI
WormBase CE26405 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504159 Y45G5AM.3 [Caenorhabditis elegans] gb|AAG23365.1| Hypothetical protein Y45G5AM.3 [Caenorhabditis elegans] 0.0
blast NP_504640 T05H4.15a [Caenorhabditis elegans] gb|AAB66020.1| Hypothetical protein T05H4.15a [Caenorhabditis elegans] 0.0
blast NP_001024106 T05H4.15c [Caenorhabditis elegans] gb|AAX88811.1| Hypothetical protein T05H4.15c [Caenorhabditis elegans] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.6E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.6E-5
Sequence
Target Sequence 
>C. ELEGANS:177152_AT
ggatgttcgaattggcgccgatgatctggaaactttccgctggtggcttcaaaaggttcc
agaacaacttgatgatctacagctgataactcttgaacaagatagagaaactttcacgct
ccccaccgaattcgtagctttgccgcaaatcatgactgttccgggcttctacttctggtg
ccgagctgcgttctccgatgagcaattcctcaagctggctgccaaaactatgagctttga
cgctgtaaacattactgacagtggaatcaatcaattcctgaagaattggctcaatggaaa
aagtgttcccggatttagacaggctcttttgtggtgtagaaggcaggcagacaagcctgc
gatgattcgagggatccaagttcggcaatgggataaggctttcgaggaagaagcagccgg
cttctgtggtgatttcgagagagtttgtggtcgtggagattgtctgcaaatttatagttt
gatcgattcattcgagagcctaactctcagcattatggacgatagaatttcaatttatgc
tactggacgcaagtgtacatacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTTCGAATTGGCGCCGATGAT 172 515 648 Antisense
GCGCCGATGATCTGGAAACTTTCCG 6 289 662 Antisense
TTTCCGCTGGTGGCTTCAAAAGGTT 307 669 681 Antisense
AGATAGAGAAACTTTCACGCTCCCC 267 65 747 Antisense
GAATTCGTAGCTTTGCCGCAAATCA 451 323 775 Antisense
AGCTGCGTTCTCCGATGAGCAATTC 347 81 831 Antisense
GTGTTCCCGGATTTAGACAGGCTCT 410 485 950 Antisense
GACAGGCTCTTTTGTGGTGTAGAAG 283 369 965 Antisense
GCCTGCGATGATTCGAGGGATCCAA 561 281 1002 Antisense
GAAGCAGCCGGCTTCTGTGGTGATT 651 341 1057 Antisense
GCTACTGGACGCAAGTGTACATACC 198 303 1186 Antisense
Sequence Source Affymetrix Proprietary Database