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[177151_at]

Description Y46E12A.A /REP_DB=WormBase Gene ID /WP=CE23402 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60611.1
Cluster 6grp_total > 53      4grp_total > 08      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 5.3
(-3)
A 		20.6
(-1.7)
A 		31.7
(-0.7)
A 		74.6
(3)
A 		69
B 6.6
(-3)
A 		12.9
(-2.1)
A 		50.2
(3)
A 		48.8
(2.8)
A 		44
C 32.9
(-1.2)
A 		6.3
(-3)
A 		6
(-3)
A 		98.1
(3)
A 		92
avr 14.9
(-2.8) 		13.3
(-3) 		29.3
(-1.4) 		73.8
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 26
(1.4)
A 		2.7
(-3)
A 		34.5
(3)
A 		15.1
(-0.7)
A 		3
(-2.9)
A 		11.8
(-1.3)
A 		32
B 17.4
(-0.9)
A 		15.7
(-1.1)
A 		45.5
(3)
A 		1.9
(-3)
A 		24.5
(0.1)
A 		8.3
(-2.1)
A 		44
C 6.3
(-3)
A 		38.8
(3)
A 		16
(-1.2)
A 		21.6
(-0.2)
A 		19.2
(-0.6)
A 		21.9
(-0.1)
A 		33
avr 16.6
(-1.8) 		19.1
(-1.1) 		32
(3) 		12.9
(-3) 		15.6
(-2.2) 		14
(-2.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.9
(-3)
A 		4.5
(-1.3)
A 		8.3
(1.3)
A 		10.9
(3)
A 		9
B 2.1
(-3)
A 		3.2
(-2.3)
A 		11.6
(3)
A 		10.4
(2.2)
A 		10
C 10.9
(0.7)
A 		1.8
(-3)
A 		2.1
(-2.9)
A 		16.5
(3)
A 		15
avr 5
(-1.9) 		3.2
(-3) 		7.3
(-0.4) 		12.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.8
(0.5)
A 		1
(-2.9)
A 		7.5
(3)
A 		3.8
(-0.4)
A 		0.9
(-3)
A 		2.9
(-1.2)
A 		7
B 6
(0.1)
A 		5.2
(-0.3)
A 		11
(3)
A 		0.5
(-3)
A 		10
(2.4)
A 		3.1
(-1.5)
A 		11
C 2.4
(-3)
A 		11.9
(3)
A 		4.1
(-1.9)
A 		4.3
(-1.8)
A 		6.2
(-0.6)
A 		7.3
(0.1)
A 		10
avr 4.4
(-1) 		6
(1) 		7.5
(3) 		2.9
(-3) 		5.7
(0.7) 		4.4
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19017
Sequence Type Exemplar sequence
Representative Public ID Y46E12A.A NCBI
Target Description Y46E12A.A /REP_DB=WormBase Gene ID /WP=CE23402 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60611.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065056, NM_065055
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39A3CL.4b ENSEMBL cdna:known chromosome:CEL140:III:1772635:1778058:-1 gene:Y39A3CL.4 A 
NM_065055 NCBI Caenorhabditis elegans Y39A3CL.4a (Y39A3CL.4) mRNA, complete cds. A 
GENEFINDER00000009095 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1772635:1777406:-1 None
NM_065056 NCBI Caenorhabditis elegans Y39A3CL.4b (Y39A3CL.4) mRNA, complete cds. A 
Y39A3CL.4a ENSEMBL cdna:known chromosome:CEL140:III:1772556:1777597:-1 gene:Y39A3CL.4 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1765446-1775070(-) 98.02 100.0
Public Domain and Genome References
Ensembl Y39A3CL.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68885 Hypothetical protein Y39A3CL.4a [Caenorhabditis elegans] ref|NP_497456.2| Y39A3CL.4a [Caenorhabditis elegans] 0.0
blast AAK68886 Hypothetical protein Y39A3CL.4b [Caenorhabditis elegans] ref|NP_497457.1| Y39A3CL.4b [Caenorhabditis elegans] 0.0
blast AAK68886 Hypothetical protein Y39A3CL.4b [Caenorhabditis elegans] ref|NP_497457.1| Y39A3CL.4b [Caenorhabditis elegans] 1.0E-172
blast AAK68885 Hypothetical protein Y39A3CL.4a [Caenorhabditis elegans] ref|NP_497456.2| Y39A3CL.4a [Caenorhabditis elegans] 1.0E-172
Sequence
Target Sequence 
>C. ELEGANS:177151_AT
actcaccaactcaaaggatgccctccagaaaagtgatcagatgattcgcgtgcagtcaat
gcgtcagtacatgccagtgctcaacatttacgaaatttcccctgtcggtgcacacaatca
gatcggcaaatttcagttcccggaaaccaaatttattgccgttacagcttatcagagcga
gctagtcaagcagctaaaggtccaaaagaacaaattcgcgcagggatttcgtgagagcat
caagtcaaatgccacgtcatcaactaaacgtccattatcgacaacttcgtccaattcatc
accagactctacactatctatgtcatccgaaaatttgggtcacaccacgaaaaaggggcg
gggtggcggccaagagatcggagtgctcctcacatctcaaaattatcagagttttgatca
gttttcgaatttttctcaagctttcccgccaaattttcagccaagctatgcccagcacta
tccgattccagattatcagccgaattacgcacaatttggggcggaaaacttctggagttt
aaaccccgccccctatgattttactgctgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCACCAACTCAAAGGATGCCCTC 694 99 1482 Antisense
GATTCGCGTGCAGTCAATGCGTCAG 171 433 1524 Antisense
TGCGTCAGTACATGCCAGTGCTCAA 257 583 1541 Antisense
ATTCGCGCAGGGATTTCGTGAGAGC 392 7 1695 Antisense
ACGTCCATTATCGACAACTTCGTCC 344 95 1749 Antisense
ACTTCGTCCAATTCATCACCAGACT 61 105 1765 Antisense
GACTCTACACTATCTATGTCATCCG 17 375 1786 Antisense
GGCCAAGAGATCGGAGTGCTCCTCA 95 545 1849 Antisense
GTGCTCCTCACATCTCAAAATTATC 470 479 1864 Antisense
TTCGAATTTTTCTCAAGCTTTCCCG 490 573 1905 Antisense
CCCCCTATGATTTTACTGCTGCTGG 367 261 2030 Antisense
Sequence Source Affymetrix Proprietary Database