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[177150_s_at]

Description Y73B6BL.W /REP_DB=WormBase Gene ID /WP=CE26295 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23481.1
Cluster 6grp_total > 48      4grp_total > 13      6grp_cgc > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 72.1
(-0.2)
P 		12.9
(-3)
A 		16
(-2.9)
A 		138.9
(3)
P 		126
B 72.9
(1.5)
P 		41.1
(-2.5)
A 		37.4
(-3)
A 		84.7
(3)
P 		47
C 67.2
(-0.7)
P 		43.9
(-2.1)
P 		29.3
(-3)
A 		129.2
(3)
P 		100
avr 70.7
(-0.1) 		32.6
(-2.7) 		27.6
(-3) 		117.6
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 83
(3)
P 		48.3
(-0.9)
A 		54.3
(-0.2)
P 		29.4
(-3)
A 		67.2
(1.2)
A 		48.5
(-0.9)
M 		54
B 74.6
(3)
P 		30.8
(-2.6)
A 		48.9
(-0.3)
P 		33.4
(-2.3)
A 		27.6
(-3)
A 		50.2
(-0.1)
P 		47
C 53.2
(0.6)
P 		38.3
(-0.4)
P 		45.9
(0.1)
A 		2.6
(-3)
A 		22.5
(-1.6)
P 		86.4
(3)
P 		84
avr 70.3
(3) 		39.1
(-0.9) 		49.7
(0.5) 		21.8
(-3) 		39.1
(-0.9) 		61.7
(1.9) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26.3
(3)
P 		2.8
(-3)
A 		4.2
(-2.6)
A 		20.3
(1.5)
P 		24
B 23.2
(3)
P 		10.1
(-2.4)
A 		8.7
(-3)
A 		18
(0.8)
P 		15
C 22.2
(3)
P 		12.6
(-1.8)
P 		10.2
(-3)
A 		21.8
(2.8)
P 		12
avr 23.9
(3) 		8.5
(-2.7) 		7.7
(-3) 		20
(1.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 15.3
(0.7)
P 		17.2
(1.5)
A 		11.8
(-1)
P 		7.5
(-3)
A 		20.3
(3)
A 		11.8
(-1)
M 		13
B 26
(3)
P 		10.2
(-2.5)
A 		11.9
(-1.9)
P 		8.9
(-3)
A 		11.2
(-2.2)
A 		18.7
(0.4)
P 		17
C 19.7
(1.1)
P 		11.7
(-0.6)
P 		11.7
(-0.6)
A 		0.5
(-3)
A 		7.3
(-1.6)
P 		28.9
(3)
P 		28
avr 20.3
(3) 		13
(0) 		11.8
(-0.5) 		5.6
(-3) 		12.9
(-0) 		19.8
(2.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177150_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19161
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.W NCBI
Target Description Y73B6BL.W /REP_DB=WormBase Gene ID /WP=CE26295 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23481.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028404 NCBI Caenorhabditis elegans CaSPase family member (csp-2) (csp-2) mRNA, complete cds. 11/11 None
SNAP00000032031 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6314445:6315470:1 11/11 None
GENEFINDER00000032093 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6307723:6316193:1 11/11 None
Y73B6BL.7 ENSEMBL cdna:known chromosome:CEL140:IV:6307723:6315703:1 gene:Y73B6BL.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6310668-6315619(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol csp-2
Ensembl Y73B6BL.7
Entrez Gene 177391 Entrez gene
SwissProt Q9Y055 EMBL-EBI
WormBase CE28270 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
30693 caspase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM44398 Caspase protein 2 [Caenorhabditis elegans] ref|NP_001023575.1| CaSPase family member (csp-2) [Caenorhabditis elegans] gb|AAC98295.1| caspase-related protein 2A [Caenorhabditis elegans] 0.0
blast CAD44516 VAB-10B protein [Caenorhabditis elegans] 1.0E-148
blast CAH04759 Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04743.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04711.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] ref|NP_001021859.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 1.0E-148
blast AAC98296 caspase-related protein 2B [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR001309 EMBL-EBI Caspase-1, p20 2.8E-81
Pfam IPR001309 EMBL-EBI Caspase-1, p20 2.5E-71
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.3E-6
Pfam IPR001309 EMBL-EBI Caspase-1, p20 2.5E-71
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023575.1 1 37-59
Y73B6BL.7 1 37-59
GENEFINDER00000032093 1 37-59
Sequence
Target Sequence 
>C. ELEGANS:177150_S_AT
gatcagggacttctttatggtgtagatggtgtgcccgttcagatgcttgacattattgat
ctaatgtgtactgcgtcacttgcgaaaaagccaaaatggcttatgtgtgtgtgctgtcga
ggagacagaatcgacagagcagtccgctgtgatggattcatcgacaacttttttgatcgt
tttccaaagttcttccagtttatgaaatctaaattcccatcacaccaaacctcgtcgtcg
caagcagatttattggtttctttctcaacatctcctggcttcctatcattcagagatgaa
accaaaggcacatggtatattcaggaactttatcgagtgattattgagaacgcgaaagat
actcatttggcggatctcctaatggagaccaacagacgagtcgtggagaaatatgaggca
gataaagtagtgatcgtgtttctggtcgaggttcacaaaacaactattcttcgacgtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGGGACTTCTTTATGGTGTAG 533 417 1444 Antisense
TGGTGTAGATGGTGTGCCCGTTCAG 447 553 1461 Antisense
TGCCCGTTCAGATGCTTGACATTAT 302 585 1475 Antisense
GATCTAATGTGTACTGCGTCACTTG 335 419 1501 Antisense
GTACTGCGTCACTTGCGAAAAAGCC 508 457 1511 Antisense
GCCAAAATGGCTTATGTGTGTGTGC 41 279 1533 Antisense
ATGTGTGTGTGCTGTCGAGGAGACA 620 49 1546 Antisense
ACAGAATCGACAGAGCAGTCCGCTG 539 107 1568 Antisense
CTCCTGGCTTCCTATCATTCAGAGA 221 235 1715 Antisense
TCATTTGGCGGATCTCCTAATGGAG 401 615 1806 Antisense
CAAAACAACTATTCTTCGACGTCTA 406 191 1899 Antisense
Sequence Source Affymetrix Proprietary Database