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[177149_at]

Description R74.2 /REP_DB=WormBase Gene ID /WP=CE23931 /TR=Q22029 /GB=CAA85275.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 72      4grp_total > 49      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 31.4
(-3)
A 		99.7
(1.4)
P 		124.8
(3)
P 		38.6
(-2.5)
A 		93
B 20.9
(-3)
A 		91.4
(2.5)
P 		98.4
(3)
P 		30.4
(-2.3)
P 		78
C 12.9
(-3)
A 		106.3
(3)
P 		99.7
(2.6)
P 		46.7
(-0.8)
A 		93
avr 21.7
(-3) 		99.1
(2.4) 		107.6
(3) 		38.6
(-1.8) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 80.6
(-0.5)
M 		77
(-0.9)
P 		84.4
(-0.1)
P 		89.7
(0.5)
P 		113.4
(3)
P 		57
(-3)
P 		56
B 58.8
(-2.3)
P 		85.8
(0.7)
P 		107.2
(3)
P 		73.2
(-0.7)
P 		102.5
(2.5)
P 		52.3
(-3)
P 		55
C 35.8
(-3)
P 		126.7
(3)
P 		98
(1.1)
P 		97.1
(1)
P 		84.8
(0.2)
P 		59.6
(-1.4)
P 		91
avr 58.4
(-2.7) 		96.5
(2.5) 		96.5
(2.5) 		86.7
(1.2) 		100.2
(3) 		56.3
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 11.4
(-1.7)
A 		21.6
(0.5)
P 		32.6
(3)
P 		5.7
(-3)
A 		27
B 6.7
(-2.9)
A 		22.6
(2.9)
P 		22.8
(3)
P 		6.5
(-3)
P 		16
C 4.3
(-3)
A 		30.6
(2.2)
P 		34.8
(3)
P 		7.9
(-2.3)
A 		31
avr 7.5
(-2.8) 		24.9
(1.7) 		30.1
(3) 		6.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.9
(-2.7)
M 		27.4
(1)
P 		18.4
(-1.7)
P 		22.7
(-0.4)
P 		34.2
(3)
P 		13.9
(-3)
P 		20
B 20.5
(-2.7)
P 		28.6
(-0.5)
P 		26
(-1.2)
P 		19.4
(-3)
P 		41.7
(3)
P 		19.5
(-3)
P 		22
C 13.3
(-3)
P 		38.7
(3)
P 		24.9
(-0.3)
P 		19.5
(-1.5)
P 		27.4
(0.3)
P 		20
(-1.4)
P 		25
avr 16.2
(-3) 		31.6
(2.1) 		23.1
(-0.7) 		20.5
(-1.6) 		34.4
(3) 		17.8
(-2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6831
Sequence Type Exemplar sequence
Representative Public ID R74.2 NCBI
Target Description R74.2 /REP_DB=WormBase Gene ID /WP=CE23931 /TR=Q22029 /GB=CAA85275.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065437 NCBI Caenorhabditis elegans R74.2 (R74.2) mRNA, complete cds. 11/11 None
R74.2 ENSEMBL cdna:known chromosome:CEL140:III:4187128:4189972:1 gene:R74.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044747 5/11 Cross Hyb Matching Probes None
GENEFINDER00000044758 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4187127-4189972(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R74.2
Entrez Gene 175539 Entrez gene
SwissProt Q22029 EMBL-EBI
WormBase CE23931 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85275 Hypothetical protein R74.2 [Caenorhabditis elegans] ref|NP_497838.1| R74.2 [Caenorhabditis elegans] 1.0E-177
blast CAE72861 Hypothetical protein CBG20160 [Caenorhabditis briggsae] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:177149_AT
aatcggttccggctgtggaggaggtgggtgtggtggcggatatccacagggttacggtag
ctatgctggttatggaaacagtggaggatgtggaggtggaagtggcaccggatgcggggg
ttataacgatgatgaagacgaggattcatatgaagacagcgatgaggagaatggaaagag
tggagaagcaaagatcaacaagaaggatccattggaagatttggagctggaagatttgga
aaaactatcaaaatctgatgacacaaaatctggaacttctgaggcagtcacttctgatga
tgttgatgttgaaccaactgagattaaaaaatcaaagttaggagatgatgaggacctgat
tgacgatcgaaaaaaaaaagcaaaaagaaacttcctcgtcaagtgccgacctactttcgg
tttcaatcgttatctccgattatcttttgccatccgaaagataaatgccagttgcatata
cacaaagaaaagtgaaagaacgttcataaagacgatagcttctcatatttctggtaggcg
aggagaggaagtttttgaaattgactcttttggcttttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGGTTCCGGCTGTGGAGGAGGT 10 153 588 Antisense
GAGGTGGGTGTGGTGGCGGATATCC 580 401 608 Antisense
GGCGGATATCCACAGGGTTACGGTA 440 513 622 Antisense
GGGTTACGGTAGCTATGCTGGTTAT 136 489 636 Antisense
GAAGTGGCACCGGATGCGGGGGTTA 102 315 686 Antisense
CGTCAAGTGCCGACCTACTTTCGGT 340 247 984 Antisense
TACTTTCGGTTTCAATCGTTATCTC 59 643 999 Antisense
TATCTCCGATTATCTTTTGCCATCC 301 659 1018 Antisense
GCTTCTCATATTTCTGGTAGGCGAG 42 307 1105 Antisense
GTAGGCGAGGAGAGGAAGTTTTTGA 349 455 1121 Antisense
GAAATTGACTCTTTTGGCTTTTTTG 523 363 1144 Antisense
Sequence Source Affymetrix Proprietary Database