[Home] | [Total List]

[177145_at]

Description Y46E12A.B /REP_DB=WormBase Gene ID /WP=CE23403 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60612.1
Cluster 6grp_total > 51      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.8
(-3)
A 		2.8
(-2.8)
A 		2.7
(-2.8)
A 		31.8
(3)
A 		30
B 6.7
(-2.7)
A 		6
(-3)
A 		5.9
(-3)
A 		20.3
(3)
A 		14
C 3.2
(-3)
A 		15.2
(2.4)
A 		5.6
(-1.9)
A 		16.5
(3)
A 		13
avr 3.9
(-3) 		8
(-1.7) 		4.7
(-2.7) 		22.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.3
(2.3)
A 		4.7
(3)
A 		1.4
(-3)
A 		3.7
(1.2)
A 		2.9
(-0.3)
A 		3.1
(0.1)
A 		3
B 4
(-2.4)
A 		6.9
(-1.6)
A 		22.8
(3)
A 		2
(-3)
A 		4
(-2.4)
A 		4.5
(-2.3)
A 		21
C 5.3
(-1.7)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		17.7
(3)
A 		5.8
(-1.5)
A 		2.3
(-2.8)
A 		16
avr 4.5
(-1.7) 		4.6
(-1.6) 		8.7
(3) 		7.8
(2) 		4.2
(-2) 		3.3
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.7
(-2.9)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		4.6
(3)
A 		4
B 2.1
(-1.6)
A 		1.5
(-2.8)
A 		1.4
(-3)
A 		4.3
(3)
A 		3
C 1
(-3)
A 		4.4
(3)
A 		1.9
(-1.4)
A 		2.8
(0.2)
A 		3
avr 1.3
(-3) 		2.2
(-0.9) 		1.3
(-3) 		3.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.8
(-0.9)
A 		1.7
(3)
A 		0.3
(-3)
A 		0.9
(-0.4)
A 		0.9
(-0.4)
A 		0.8
(-0.9)
A 		1
B 1.4
(-1.9)
A 		2.3
(-0.8)
A 		5.5
(3)
A 		0.5
(-3)
A 		1.6
(-1.7)
A 		1.7
(-1.6)
A 		5
C 1.9
(-0.2)
A 		0.6
(-2.6)
A 		0.4
(-3)
A 		3.6
(3)
A 		1.9
(-0.2)
A 		0.8
(-2.3)
A 		3
avr 1.4
(-1.2) 		1.5
(-0.6) 		2.1
(3) 		1.7
(0.6) 		1.5
(-0.6) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19068
Sequence Type Exemplar sequence
Representative Public ID Y46E12A.B NCBI
Target Description Y46E12A.B /REP_DB=WormBase Gene ID /WP=CE23403 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60612.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065052(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065052 NCBI Caenorhabditis elegans Y46E12A.3 (Y46E12A.3) mRNA, complete cds. 10/11 A 
Y46E12A.3 ENSEMBL cdna:known chromosome:CEL140:III:1752172:1754931:-1 gene:Y46E12A.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1752227-1756764(-) 87.96 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46E12A.3
Entrez Gene 175323 Entrez gene
SwissProt Q9N3V8 EMBL-EBI
WormBase CE28265 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U95D:67354_AT similar to CG12206-PA hs
RAE230A:1374367_AT similar to CG12206-PA, isoform A rn
RAT230_2:1374367_AT similar to CG12206-PA, isoform A rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60612 Hypothetical protein Y46E12A.3 [Caenorhabditis elegans] ref|NP_497453.1| Y46E12A.3 [Caenorhabditis elegans] 1.0E-133
blast CAE69092 Hypothetical protein CBG15114 [Caenorhabditis briggsae] 7.0E-97
blast XP_371694 PREDICTED: similar to CG12206-PA [Homo sapiens] 2.0E-21
Protein Domains
Database ID Description E-Value
scop a.140.2.SAP domain All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain 1.79999995231628
Sequence
Target Sequence 
>C. ELEGANS:177145_AT
ggaatggaagtgtccgcggtaggaagaatttggtgaaaaaggcactgctcaagctggacg
atcgttcgaaaaatgctggaaattccggagttatagtgtatttgacgtcatgtggggtgt
taaggaggtcctatgataggtgcaaaaatgtgaagtttaaaaaaaacgaaaaatcaggaa
gaagaaaaaaatctcaaaaaaacggtcgagaaagaaccaaaaaagacaaaaataaaaatc
aaatagttgtaaaattttctcagacccaactcctagaagccttccgagtcaaatacgaga
ttcgagatctcaatatcagcaatttccacgtggcagagttagccgaaaagctgaaattaa
atgtggaatttcaaaaggatttgattttcgattccctacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGGAAGTGTCCGCGGTAGGAA 646 531 371 Antisense
AAAAGGCACTGCTCAAGCTGGACGA 709 131 407 Antisense
TGCTCAAGCTGGACGATCGTTCGAA 446 579 416 Antisense
GTGTATTTGACGTCATGTGGGGTGT 44 487 466 Antisense
ATGTGGGGTGTTAAGGAGGTCCTAT 497 35 480 Antisense
TAAAATTTTCTCAGACCCAACTCCT 85 637 620 Antisense
CCAACTCCTAGAAGCCTTCCGAGTC 587 275 636 Antisense
GCCTTCCGAGTCAAATACGAGATTC 479 279 649 Antisense
GATCTCAATATCAGCAATTTCCACG 578 419 676 Antisense
TTTCCACGTGGCAGAGTTAGCCGAA 423 665 693 Antisense
GGATTTGATTTTCGATTCCCTACCA 45 511 747 Antisense
Sequence Source Affymetrix Proprietary Database