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[177142_at]

Description Y38C1AA.A /REP_DB=WormBase Gene ID /WP=CE25242 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59462.1
Cluster 6grp_total > 10      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 21.3
(-2.7)
A 		17.6
(-2.9)
A 		16.7
(-3)
A 		114.5
(3)
P 		98
B 42.8
(0.8)
A 		45
(1)
A 		5.3
(-3)
A 		65.3
(3)
A 		60
C 18.7
(-3)
A 		30.5
(-2.2)
A 		23.6
(-2.7)
A 		104.3
(3)
M 		86
avr 27.6
(-2.1) 		31
(-1.8) 		15.2
(-3) 		94.7
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 18
(-0.7)
A 		31.9
(1.7)
A 		39.5
(3)
A 		4.5
(-3)
A 		20.7
(-0.2)
A 		28.2
(1.1)
A 		35
B 27.9
(1)
A 		24.7
(0.4)
A 		27.7
(1)
A 		37.3
(3)
A 		23
(0)
A 		8.5
(-3)
A 		29
C 2.6
(-3)
A 		56.9
(3)
A 		10.6
(-2.1)
A 		28.2
(-0.2)
A 		18.4
(-1.3)
A 		9.2
(-2.3)
A 		54
avr 16.2
(-2.8) 		37.8
(3) 		25.9
(-0.2) 		23.3
(-0.9) 		20.7
(-1.6) 		15.3
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.7
(-1.2)
A 		3.8
(-3)
A 		4.4
(-2.7)
A 		16.8
(3)
P 		13
B 13.7
(2.9)
A 		11.1
(1.7)
A 		1.2
(-3)
A 		13.9
(3)
A 		13
C 6.2
(-3)
A 		8.8
(-1.6)
A 		8.2
(-1.9)
A 		17.6
(3)
M 		11
avr 9.2
(-0.6) 		7.9
(-1.3) 		4.6
(-3) 		16.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.3
(-1.7)
A 		11.3
(3)
A 		8.6
(1.4)
A 		1.1
(-3)
A 		6.2
(-0)
A 		6.9
(0.4)
A 		10
B 9.7
(2.8)
A 		8.2
(1.5)
A 		6.7
(0.1)
A 		9.9
(3)
A 		9.4
(2.6)
A 		3.2
(-3)
A 		7
C 1
(-3)
A 		17.4
(3)
A 		2.7
(-2.4)
A 		5.7
(-1.3)
A 		6
(-1.2)
A 		3.1
(-2.2)
A 		16
avr 4.7
(-2.8) 		12.3
(3) 		6
(-1.8) 		5.6
(-2.1) 		7.2
(-0.9) 		4.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19282
Sequence Type Exemplar sequence
Representative Public ID Y38C1AA.A NCBI
Target Description Y38C1AA.A /REP_DB=WormBase Gene ID /WP=CE25242 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59462.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y38C1AA.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38C1AA.A Y38C1AA.A /REP_DB=WormBase Gene ID /WP=CE25242 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59462.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:186036-186385(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177142_AT
tggaattagctgcttcgtttccgcggaaacgagtgcgcgccgccatgacaaaaaaaacag
gagagagagctcaggagagagacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnncgtgatttcagatgaccttgcacaggaattaaattact
ttagtttttcgatgtttcgttttgttgattcctcatactat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATTAGCTGCTTCGTTTCCGCG 301 547 14 Antisense
TAGCTGCTTCGTTTCCGCGGAAACG 477 593 20 Antisense
TTCCGCGGAAACGAGTGCGCGCCGC 508 697 32 Antisense
TGCGCGCCGCCATGACAAAAAAAAC 689 583 47 Antisense
GAGAGAGAGCTCAGGAGAGAGACGC 324 395 74 Antisense
CGTGATTTCAGATGACCTTGCACAG 698 243 156 Antisense
TTCAGATGACCTTGCACAGGAATTA 247 649 162 Antisense
ACCTTGCACAGGAATTAAATTACTT 69 87 170 Antisense
CGATGTTTCGTTTTGTTGATTCCTC 189 249 203 Antisense
GTTTCGTTTTGTTGATTCCTCATAC 220 451 207 Antisense
TCGTTTTGTTGATTCCTCATACTAT 200 605 210 Antisense
Sequence Source Affymetrix Proprietary Database