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[177138_at]

Description Y38C1AA.C /REP_DB=WormBase Gene ID /WP=CE25244 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59464.1
Cluster 6grp_high1_10_10 > 93      6grp_total > 19      4grp_total > 35      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 86.2
(-3)
P 		180.3
(3)
A 		125.6
(-0.5)
P 		130.5
(-0.2)
A 		94
B 110.4
(3)
P 		87.1
(0.4)
P 		85.5
(0.2)
A 		57.1
(-3)
A 		53
C 89.3
(-3)
P 		152.1
(2.7)
A 		96.1
(-2.4)
P 		155
(3)
A 		66
avr 95.3
(-3) 		139.8
(3) 		102.4
(-2) 		114.2
(-0.5) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 105.1
(1.1)
A 		55.5
(-3)
A 		90.5
(-0.1)
A 		128.7
(3)
P 		103.1
(0.9)
M 		110.1
(1.5)
P 		73
B 104.9
(1.9)
P 		78.3
(-2.2)
P 		112.5
(3)
P 		73.6
(-2.9)
A 		72.8
(-3)
P 		80.3
(-1.9)
A 		40
C 123.5
(2.6)
P 		65.6
(-3)
A 		68.4
(-2.7)
P 		111.7
(1.5)
A 		127.5
(3)
P 		112.8
(1.6)
P 		62
avr 111.2
(3) 		66.5
(-3) 		90.5
(0.2) 		104.7
(2.1) 		101.1
(1.6) 		101.1
(1.6) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 31.4
(0.7)
P 		39.1
(3)
A 		32.8
(1.1)
P 		19.1
(-3)
A 		20
B 35.2
(3)
P 		21.5
(-0.6)
P 		19.8
(-1)
A 		12.2
(-3)
A 		23
C 29.6
(-1.8)
P 		43.7
(3)
A 		33.5
(-0.5)
P 		26.1
(-3)
A 		18
avr 32.1
(2) 		34.8
(3) 		28.7
(0.7) 		19.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 19.4
(-3)
A 		19.7
(-2.9)
A 		19.7
(-2.9)
A 		32.6
(3)
P 		31.1
(2.3)
M 		26.8
(0.4)
P 		13
B 36.5
(3)
P 		26.1
(-0.7)
P 		27.3
(-0.2)
P 		19.5
(-3)
A 		29.6
(0.6)
P 		29.9
(0.7)
A 		17
C 45.8
(3)
P 		20
(-2.5)
A 		17.4
(-3)
P 		22.5
(-1.9)
A 		41.3
(2)
P 		37.7
(1.3)
P 		28
avr 33.9
(3) 		21.9
(-2.8) 		21.5
(-3) 		24.9
(-1.4) 		34
(3) 		31.5
(1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19199
Sequence Type Exemplar sequence
Representative Public ID Y38C1AA.C NCBI
Target Description Y38C1AA.C /REP_DB=WormBase Gene ID /WP=CE25244 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59464.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067469
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038639 ENSEMBL cdna:SNAP chromosome:CEL140:IV:147677:148688:-1 9/11 None
GENEFINDER00000038664 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:147208:148105:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067469 8/11 Cross Hyb Matching Probes None
Y38C1AA.8 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:147670-148105(-) 95.35 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59464 Hypothetical protein Y38C1AA.8 [Caenorhabditis elegans] ref|NP_499870.2| Y38C1AA.8 [Caenorhabditis elegans] 7.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000038639 1 89-111
GENEFINDER00000038664 1 88-110
Sequence
Target Sequence 
>C. ELEGANS:177138_AT
acagcctgacacctcagactatgatcataagcctaggccaaaggccctaagaaccttttt
tcagtttttttccttaaacctcccgctatcaacatccaaaccaggccccccatatgattc
gccaattgcaccgatgacctccccatcaccatctggaaacgtggtggtcgttggcacgga
cggcacgtcaagtgtctccgatcgttggccaccccagaaaacatggatctcaccgccccg
agtaccgatagatcggcattttgtgaccgccgcagtgccgcatgtgctcatgtttttgct
cgtttgcatcgtctttaccgcccaacaaacaaggatctcaactctcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCCTGACACCTCAGACTATGAT 274 109 18 Antisense
CCGCTATCAACATCCAAACCAGGCC 59 263 100 Antisense
TGATTCGCCAATTGCACCGATGACC 615 563 132 Antisense
AACGTGGTGGTCGTTGGCACGGACG 310 137 175 Antisense
CGGACGGCACGTCAAGTGTCTCCGA 126 243 194 Antisense
CGTTGGCCACCCCAGAAAACATGGA 498 245 220 Antisense
CCGCCCCGAGTACCGATAGATCGGC 48 263 250 Antisense
ATCGGCATTTTGTGACCGCCGCAGT 126 35 269 Antisense
GTGCCGCATGTGCTCATGTTTTTGC 345 479 292 Antisense
TTTTGCTCGTTTGCATCGTCTTTAC 633 677 311 Antisense
CAAACAAGGATCTCAACTCTCGAAA 370 191 343 Antisense
Sequence Source Affymetrix Proprietary Database