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[177137_at]

Description Y45G5AM.J /REP_DB=WormBase Gene ID /WP=CE26407 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23367.1
Cluster 6grp_total > 57      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 6
(-3)
A 		43.8
(3)
A 		8.4
(-2.6)
A 		32.9
(1.3)
A 		38
B 6.3
(-0.8)
A 		9.2
(1.3)
A 		3.3
(-3)
A 		11.6
(3)
A 		8
C 7.8
(-2.8)
A 		3.7
(-3)
A 		4
(-3)
A 		104.8
(3)
P 		101
avr 6.7
(-2.8) 		18.9
(-1.2) 		5.2
(-3) 		49.8
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 36.5
(3)
A 		3.4
(-3)
A 		5.1
(-2.7)
A 		6.6
(-2.4)
A 		22
(0.4)
A 		11.5
(-1.5)
A 		33
B 4.9
(-2.6)
A 		6.2
(-2.3)
A 		19.4
(-0.1)
A 		37.2
(3)
A 		2.4
(-3)
A 		30
(1.8)
A 		35
C 6.7
(-2.3)
A 		4
(-2.8)
A 		21.4
(0.7)
A 		4.9
(-2.7)
A 		3.2
(-3)
A 		33
(3)
A 		30
avr 16
(0.4) 		4.5
(-3) 		15.3
(0.2) 		16.2
(0.5) 		9.2
(-1.6) 		24.8
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.2
(-3)
A 		9.5
(3)
A 		2.2
(-3)
A 		4.8
(-0.9)
A 		7
B 2
(1.2)
A 		2.3
(2.3)
A 		0.8
(-3)
A 		2.5
(3)
A 		2
C 2.6
(-2.5)
A 		1.1
(-3)
A 		1.4
(-2.9)
A 		17.7
(3)
P 		17
avr 2.3
(-2.3) 		4.3
(-0.5) 		1.5
(-3) 		8.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.7
(3)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		1.7
(-2.4)
A 		6.6
(2.9)
A 		2.8
(-1.2)
A 		6
B 1.7
(-2.6)
A 		2.1
(-2.4)
A 		4.7
(-0.8)
A 		9.9
(2.2)
A 		1
(-3)
A 		11.2
(3)
A 		10
C 2.5
(-2.1)
A 		1.2
(-2.9)
A 		5.4
(-0.4)
A 		1
(-3)
A 		1
(-3)
A 		11.1
(3)
A 		10
avr 3.6
(-1.2) 		1.5
(-3) 		3.7
(-1.1) 		4.2
(-0.7) 		2.9
(-1.8) 		8.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19498
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.J NCBI
Target Description Y45G5AM.J /REP_DB=WormBase Gene ID /WP=CE26407 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23367.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y45G5AM.J
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y45G5AM.J Y45G5AM.J /REP_DB=WormBase Gene ID /WP=CE26407 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23367.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071764 11/11 Negative Strand Matching Probes A 
Y45G5AM.9b 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4183175-4183418(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177137_AT
gagacactacacacaagattgcgacacttcttgctcaattcgtgcagatgcttactggct
cggttcatcggattcgtgagtccagacgtatcccagtcaaagtccactgcgggaaccgac
ggcgaatcgatgacagacgacggtggtgatgaggatgatgtctttggattggtggccgtg
gccgaggaatcatgcgatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACACTACACACAAGATTGCGAC 173 393 25 Antisense
GATTGCGACACTTCTTGCTCAATTC 162 435 41 Antisense
TGCAGATGCTTACTGGCTCGGTTCA 143 579 67 Antisense
GGCTCGGTTCATCGGATTCGTGAGT 255 539 81 Antisense
GATTCGTGAGTCCAGACGTATCCCA 306 433 95 Antisense
AGACGTATCCCAGTCAAAGTCCACT 15 71 108 Antisense
GTCAAAGTCCACTGCGGGAACCGAC 307 447 120 Antisense
GGGAACCGACGGCGAATCGATGACA 427 489 135 Antisense
GACAGACGACGGTGGTGATGAGGAT 700 365 156 Antisense
ATGTCTTTGGATTGGTGGCCGTGGC 257 49 182 Antisense
CGTGGCCGAGGAATCATGCGATGAT 271 245 201 Antisense
Sequence Source Affymetrix Proprietary Database