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[177135_at]

Description Y48G1BR.A /REP_DB=WormBase Gene ID /WP=CE22170 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60695.1
Cluster 6grp_total > 48      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 76.2
(-3)
A 		133.5
(-0.5)
A 		211.1
(3)
A 		202.8
(2.6)
A 		135
B 100.5
(0.5)
A 		122.1
(3)
A 		70.5
(-3)
A 		116.1
(2.3)
A 		52
C 89.7
(-3)
A 		141.2
(0.2)
A 		143.8
(0.3)
P 		186.7
(3)
P 		97
avr 88.8
(-3) 		132.3
(0.3) 		141.8
(1) 		168.5
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 110.9
(1.7)
A 		59.9
(-2.8)
A 		57.4
(-3)
A 		78.3
(-1.2)
P 		85.3
(-0.6)
A 		126.1
(3)
P 		69
B 151.7
(3)
P 		88.1
(-1.3)
A 		63
(-3)
P 		117.8
(0.7)
P 		80.6
(-1.8)
M 		92.5
(-1)
P 		89
C 81.1
(-3)
P 		108.6
(1.6)
M 		108
(1.5)
M 		116.7
(3)
M 		94.8
(-0.7)
P 		105
(1)
P 		36
avr 114.6
(3) 		85.5
(-1.5) 		76.1
(-3) 		104.3
(1.4) 		86.9
(-1.3) 		107.9
(2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 27.7
(-3)
A 		29
(-2.7)
A 		55.2
(3)
A 		29.7
(-2.6)
A 		28
B 32
(3)
A 		30.2
(2.3)
A 		16.3
(-3)
A 		24.7
(0.2)
A 		16
C 29.7
(-3)
A 		40.6
(0.2)
A 		50.1
(3)
P 		31.5
(-2.5)
P 		20
avr 29.8
(-2.4) 		33.3
(-0.6) 		40.5
(3) 		28.6
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 20.4
(-0.4)
A 		21.3
(-0.1)
A 		12.5
(-3)
A 		19.8
(-0.6)
P 		25.7
(1.4)
A 		30.7
(3)
P 		18
B 52.8
(3)
P 		29.3
(-0.8)
A 		15.3
(-3)
P 		31.2
(-0.5)
P 		32.7
(-0.2)
M 		34.5
(0.1)
P 		38
C 30.1
(0.4)
P 		33.1
(1.9)
M 		27.5
(-0.9)
M 		23.5
(-3)
M 		30.7
(0.7)
P 		35.2
(3)
P 		12
avr 34.4
(3) 		27.9
(0.6) 		18.4
(-3) 		24.8
(-0.6) 		29.7
(1.2) 		33.5
(2.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18865
Sequence Type Exemplar sequence
Representative Public ID Y48G1BR.A NCBI
Target Description Y48G1BR.A /REP_DB=WormBase Gene ID /WP=CE22170 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60695.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058307 NCBI Caenorhabditis elegans Y48G1BR.1 (Y48G1BR.1) mRNA, complete cds. 11/11 None
GENEFINDER00000003974 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:257414:259155:-1 11/11 None
SNAP00000003973 ENSEMBL cdna:SNAP chromosome:CEL140:I:257418:258683:-1 11/11 None
Y48G1BR.1 ENSEMBL cdna:known chromosome:CEL140:I:257414:259157:-1 gene:Y48G1BR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:257413-259214(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1BR.1
Entrez Gene 3565752 Entrez gene
SwissProt Q9N3P6 EMBL-EBI
WormBase CE37432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60695 Hypothetical protein Y48G1BR.1 [Caenorhabditis elegans] ref|NP_490708.2| Y48G1BR.1 [Caenorhabditis elegans] 1.0E-127
blast AAF60695 Hypothetical protein Y48G1BR.1 [Caenorhabditis elegans] ref|NP_490708.2| Y48G1BR.1 [Caenorhabditis elegans] 1.0E-117
blast CAE74309 Hypothetical protein CBG22017 [Caenorhabditis briggsae] 8.0E-81
blast CAE74309 Hypothetical protein CBG22017 [Caenorhabditis briggsae] 3.0E-80
blast CAE74308 Hypothetical protein CBG22016 [Caenorhabditis briggsae] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177135_AT
gccgatgatggctgttccgaaagaagaaatgatgaatgagggatcagataccttcgagac
aagtacagaaatgatcgaactctcgccgaacgacacctccctagaagtgaacccaatcca
gaaaacgtccgtcttctccccaataactccgcttgacggcggtatgttcaacttctccca
ggcaacaatcgaagatgatagtatggaggatcaggatgaatccactgagaaaacaactct
cgccgctgaaaatacgactgaaatgatgccaaccactcccttggaggtgattacgttcag
ctcccttccgattgaggttgacgaggtcgctgatagacgagttttgaaagagaaggagat
gacacgacccactaaaccagtgaccacaacccaatccaccgtcgcagtaagtgacccatc
agaagctggagatgacggagaaacaccatttgatcaaagtgcactggaaggactttttga
gcaggatggaagtgttattgatagctcattgagcacagatcagagccccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGATGATGGCTGTTCCGAAAGAA 49 285 267 Antisense
GAACGACACCTCCCTAGAAGTGAAC 419 347 354 Antisense
GTGAACCCAATCCAGAAAACGTCCG 658 479 373 Antisense
CCCCAATAACTCCGCTTGACGGCGG 260 255 404 Antisense
TTGACGGCGGTATGTTCAACTTCTC 658 687 419 Antisense
AACAACTCTCGCCGCTGAAAATACG 623 133 498 Antisense
CGACTGAAATGATGCCAACCACTCC 524 251 521 Antisense
GGAGGTGATTACGTTCAGCTCCCTT 140 517 549 Antisense
GAGAAGGAGATGACACGACCCACTA 541 391 616 Antisense
AATCCACCGTCGCAGTAAGTGACCC 211 165 659 Antisense
TCATTGAGCACAGATCAGAGCCCCG 564 617 772 Antisense
Sequence Source Affymetrix Proprietary Database