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[177134_s_at] --- /// --- /// ---

Description Y48G1BL.B /REP_DB=WormBase Gene ID /WP=CE22179 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60688.1
Cluster 6grp_high1_10_10 > 90      4grp_high_8_8 > 14      6grp_total > 93      4grp_total > 17      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 24
(-3)
A 		63.3
(-1.3)
P 		69.9
(-1)
P 		164.8
(3)
P 		141
B 50.6
(-3)
P 		68.3
(-0.1)
P 		87.8
(3)
P 		68.5
(-0.1)
P 		37
C 37.8
(-3)
P 		55.3
(-2.3)
P 		45
(-2.7)
P 		186.4
(3)
P 		149
avr 37.5
(-3) 		62.3
(-1.5) 		67.6
(-1.2) 		139.9
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 28.4
(-3)
A 		61.5
(-0.2)
P 		53.4
(-0.9)
P 		37.7
(-2.2)
P 		99.9
(3)
P 		55.8
(-0.7)
P 		72
B 49.4
(-1.2)
P 		50.6
(-1)
P 		41.6
(-3)
P 		41.4
(-3)
P 		50.6
(-1)
P 		68.5
(3)
P 		27
C 30.5
(-3)
P 		75.1
(3)
P 		35.7
(-2.3)
P 		65
(1.6)
P 		56.9
(0.6)
P 		31.5
(-2.9)
P 		45
avr 36.1
(-3) 		62.4
(1.8) 		43.6
(-1.6) 		48
(-0.8) 		69.1
(3) 		51.9
(-0.1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.7
(-3)
A 		13.7
(-1.1)
P 		18.3
(0.7)
P 		24.1
(3)
P 		15
B 16.1
(-1.4)
P 		16.9
(-0.6)
P 		20.3
(3)
P 		14.6
(-3)
P 		6
C 12.5
(-3)
P 		15.9
(-1.9)
P 		15.7
(-2)
P 		31.4
(3)
P 		19
avr 12.4
(-3) 		15.5
(-1.3) 		18.1
(0.1) 		23.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.2
(-3)
A 		21.9
(1)
P 		11.6
(-1.5)
P 		9.6
(-1.9)
P 		30.2
(3)
P 		13.6
(-1)
P 		25
B 17.2
(-0.2)
P 		16.8
(-0.4)
P 		10.1
(-3)
P 		11
(-2.6)
P 		20.6
(1.1)
P 		25.5
(3)
P 		15
C 11.3
(-2)
P 		22.9
(3)
P 		9.1
(-3)
P 		13.1
(-1.3)
P 		18.4
(1)
P 		10.5
(-2.4)
P 		14
avr 11.2
(-2.6) 		20.5
(1.8) 		10.3
(-3) 		11.2
(-2.6) 		23.1
(3) 		16.5
(-0.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177134_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18846
Sequence Type Exemplar sequence
Representative Public ID Y48G1BL.B NCBI
Target Description Y48G1BL.B /REP_DB=WormBase Gene ID /WP=CE22179 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60688.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026990(9), NM_058296(11), NM_058306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026990 NCBI Caenorhabditis elegans F42G4.7 (F42G4.7) mRNA, complete cds. 9/11 None
NM_058296 NCBI Caenorhabditis elegans Y48G1BL.5 (Y48G1BL.5) mRNA, complete cds. 11/11 None
NM_058306 NCBI Caenorhabditis elegans Y48G1BM.9 (Y48G1BM.9) mRNA, complete cds. 11/11 None
GENEFINDER00000016216 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:219735:220443:-1 10/11 None
SNAP00000014672 ENSEMBL cdna:SNAP chromosome:CEL140:I:248624:256642:-1 11/11 None
GENEFINDER00000014676 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:254709:256642:-1 11/11 None
GENEFINDER00000028446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13046444:13047836:-1 10/11 None
Y48G1BL.5 ENSEMBL cdna:known chromosome:CEL140:I:219735:220560:-1 gene:Y48G1BL.5 11/11 None
Y48G1BM.9 ENSEMBL cdna:known chromosome:CEL140:I:254709:256606:-1 gene:Y48G1BM.9 11/11 None
F42G4.7 ENSEMBL cdna:known chromosome:CEL140:II:13046444:13047150:-1 gene:F42G4.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028432 5/11 Cross Hyb Matching Probes None
GENEFINDER00000002011 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:219734-220560(-) 100.0 100.0
chrI:254708-255518(-) 88.14 92.02
chrII:13046440-13047250(-) 93.87 93.86
Public Domain and Genome References
Gene Title


Ensembl Y48G1BL.5
Y48G1BM.9
F42G4.7
Entrez Gene 190033 Entrez gene
190042 Entrez gene
3565876 Entrez gene
SwissProt Q7YX20 EMBL-EBI
Q9N3P8 EMBL-EBI
Q965U5 EMBL-EBI
WormBase CE34861 Wormbase
CE22179 Wormbase
CE33229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68501 Hypothetical protein Y48G1BM.9 [Caenorhabditis elegans] ref|NP_490707.2| Y48G1BM.9 [Caenorhabditis elegans] 1.0E-110
blast AAK68501 Hypothetical protein Y48G1BM.9 [Caenorhabditis elegans] ref|NP_490707.2| Y48G1BM.9 [Caenorhabditis elegans] 9.0E-98
blast AAK68501 Hypothetical protein Y48G1BM.9 [Caenorhabditis elegans] ref|NP_490707.2| Y48G1BM.9 [Caenorhabditis elegans] 5.0E-96
blast AAK68500 Hypothetical protein Y48G1BM.8 [Caenorhabditis elegans] ref|NP_490705.1| Y48G1BM.8 [Caenorhabditis elegans] 7.0E-90
blast CAE74309 Hypothetical protein CBG22017 [Caenorhabditis briggsae] 1.0E-87
blast CAE74309 Hypothetical protein CBG22017 [Caenorhabditis briggsae] 8.0E-86
blast CAE74309 Hypothetical protein CBG22017 [Caenorhabditis briggsae] 2.0E-83
blast NP_490697 Y48G1BL.5 [Caenorhabditis elegans] gb|AAF60688.1| Hypothetical protein Y48G1BL.5 [Caenorhabditis elegans] 6.0E-66
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.75
Pfam IPR000082 EMBL-EBI SEA domain 1.3E-5
Pfam IPR000082 EMBL-EBI SEA domain 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022161.1 1 38-60
NP_490697.1 1 77-99
NP_490707.2 1 207-229
Y48G1BL.5 1 77-99
Y48G1BM.9 1 207-229
F42G4.7 1 38-60
GENEFINDER00000016216 1 38-60
SNAP00000014672 1 205-227
GENEFINDER00000014676 1 205-227
GENEFINDER00000028446 2 5-27,74-96
Sequence
Target Sequence 
>C. ELEGANS:177134_S_AT
gaagccgcattttcacgcaataactctatgatttcggattacaaaattgactcgttgagt
gttactgttgacggaatgacgtcacaagcgtacatcgattcgatttccacgcaaacttca
tcatattccttatcatcgatgattgtaattatcactttcgcattggtcatcattttcgga
ttggcgatcttcattatcatgatcaccacaaaacggcgacgtcaatcgacgatgaagctg
agcatggacgacacgatccgtagcaacacaccggaatccgacgacactccgcataacgtg
catttaatgtcatacggaacaacgcctaggccatctcaaaagcagccgggaccaatcaca
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGCATTTTCACGCAATAACT 119 345 103 Antisense
GAGTGTTACTGTTGACGGAATGACG 416 401 159 Antisense
GAATGACGTCACAAGCGTACATCGA 524 329 176 Antisense
TCCACGCAAACTTCATCATATTCCT 484 589 208 Antisense
ATCACTTTCGCATTGGTCATCATTT 674 27 253 Antisense
GGATTGGCGATCTTCATTATCATGA 276 509 280 Antisense
TGATCACCACAAAACGGCGACGTCA 701 563 302 Antisense
GAAGCTGAGCATGGACGACACGATC 74 343 336 Antisense
TGGACGACACGATCCGTAGCAACAC 212 545 347 Antisense
GTAGCAACACACCGGAATCCGACGA 450 457 362 Antisense
AAAGCAGCCGGGACCAATCACAAAA 354 123 441 Antisense
Sequence Source Affymetrix Proprietary Database