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[177133_at]

Description Y19D10B.E /REP_DB=WormBase Gene ID /WP=CE25228 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59428.1
Cluster 6grp_total > 80      4grp_total > 32      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 10.2
(-3)
A 		19
(-0.9)
A 		29.7
(1.6)
A 		35.4
(3)
A 		25
B 27.4
(-0.1)
A 		8.5
(-3)
A 		47.3
(3)
A 		17.9
(-1.5)
A 		39
C 16.9
(-1.9)
A 		9.4
(-3)
A 		48.7
(3)
A 		41.6
(1.9)
A 		39
avr 18.2
(-1.8) 		12.3
(-3) 		41.9
(3) 		31.6
(0.9) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 6.6
(-2.7)
A 		33.3
(1.7)
A 		5
(-3)
A 		41.2
(3)
A 		12.2
(-1.8)
A 		21.9
(-0.2)
A 		36
B 41.6
(3)
A 		23.7
(-1.8)
A 		19.3
(-3)
A 		38.2
(2.1)
A 		29.5
(-0.3)
A 		23.3
(-1.9)
A 		22
C 27.4
(-0.7)
A 		27
(-0.8)
A 		30.6
(-0.4)
A 		65.2
(3)
A 		28.7
(-0.6)
A 		4.3
(-3)
A 		61
avr 25.2
(-1.4) 		28
(-0.8) 		18.3
(-2.7) 		48.2
(3) 		23.5
(-1.7) 		16.5
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.7
(-3)
A 		4.1
(-2.4)
A 		7.8
(3)
A 		5.2
(-0.8)
A 		4
B 8.7
(1.4)
A 		2.1
(-3)
A 		11
(3)
A 		3.8
(-1.9)
A 		9
C 5.6
(-1.8)
A 		2.7
(-3)
A 		17
(3)
A 		7
(-1.2)
A 		14
avr 6
(-1) 		3
(-3) 		11.9
(3) 		5.3
(-1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		11.8
(3)
A 		1.1
(-3)
A 		10.5
(2.3)
A 		3.7
(-1.5)
A 		5.3
(-0.6)
A 		11
B 14.5
(3)
A 		7.9
(-1)
A 		4.7
(-3)
A 		10.1
(0.3)
A 		12
(1.5)
A 		8.7
(-0.6)
A 		10
C 10.2
(1.5)
A 		8.2
(0.5)
A 		7.8
(0.3)
A 		13.1
(3)
A 		9.3
(1)
A 		1.5
(-3)
A 		12
avr 8.6
(0.7) 		9.3
(1.3) 		4.5
(-3) 		11.2
(3) 		8.3
(0.4) 		5.2
(-2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19530
Sequence Type Exemplar sequence
Representative Public ID Y19D10B.E NCBI
Target Description Y19D10B.E /REP_DB=WormBase Gene ID /WP=CE25228 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59428.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071231 NCBI Caenorhabditis elegans Y19D10B.3 (Y19D10B.3) mRNA, complete cds. 11/11 None
GENEFINDER00000024003 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2298950:2303696:-1 11/11 None
Y19D10B.3 ENSEMBL cdna:known chromosome:CEL140:V:2303299:2303696:-1 gene:Y19D10B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2303298-2303696(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y19D10B.3
Entrez Gene 189494 Entrez gene
SwissProt Q9N570 EMBL-EBI
WormBase CE25228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59429 Hypothetical protein Y19D10B.2 [Caenorhabditis elegans] ref|NP_503631.2| Y19D10B.2 [Caenorhabditis elegans] 0.0
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 1.0E-123
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 1.0E-108
blast AAF59428 Hypothetical protein Y19D10B.3 [Caenorhabditis elegans] ref|NP_503632.1| Y19D10B.3 [Caenorhabditis elegans] 1.0E-60
blast AAF59429 Hypothetical protein Y19D10B.2 [Caenorhabditis elegans] ref|NP_503631.2| Y19D10B.2 [Caenorhabditis elegans] 1.0E-36
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.9E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.1E-17
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.0E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.6E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503632.1 1 5-24
Y19D10B.3 1 5-24
GENEFINDER00000024003 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:177133_AT
ctctgcgctgtttgtgcattttgtgtgaatttgacggtattttttagtaagaaaaattgc
gacccaaagtgcacattcgaaaaccaaaatgccacttccaaaacaatcggctcgtttccc
acagagtgcagtacagtttgctcctttcttcgaataactgaggacactgacttgaccgag
gcacagctggcgtctacatttttaaacatgaagcgtttgttgggaggtgttatagtgata
agtaccaaattcaaaagcggaagtttcttggcgggattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTGCGCTGTTTGTGCATTTTGTG 133 231 40 Antisense
ACCCAAAGTGCACATTCGAAAACCA 4 21 101 Antisense
ATGCCACTTCCAAAACAATCGGCTC 397 41 128 Antisense
TCCAAAACAATCGGCTCGTTTCCCA 117 585 136 Antisense
CTCGTTTCCCACAGAGTGCAGTACA 335 233 150 Antisense
GAGTGCAGTACAGTTTGCTCCTTTC 504 401 163 Antisense
GTTTGCTCCTTTCTTCGAATAACTG 495 451 175 Antisense
AACTGAGGACACTGACTTGACCGAG 613 111 195 Antisense
CACAGCTGGCGTCTACATTTTTAAA 415 195 221 Antisense
GAAGCGTTTGTTGGGAGGTGTTATA 385 341 249 Antisense
GCGGAAGTTTCTTGGCGGGATTGGA 573 271 296 Antisense
Sequence Source Affymetrix Proprietary Database