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[177131_s_at]

Description Y19D10B.A /REP_DB=WormBase Gene ID /WP=CE25224 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59424.1
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 16      6grp_total > 02      4grp_total > 58      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10830
1 2 3 4 range
A 4672.3
(-0.4)
P 		10233.7
(3)
P 		9939.5
(2.8)
P 		492
(-3)
P 		9742
B 3977.6
(-0.9)
P 		10556.5
(3)
P 		8899.7
(2)
P 		383.8
(-3)
P 		10173
C 4315.8
(-0.9)
P 		11213.8
(3)
P 		9532.1
(2.1)
P 		503.5
(-3)
P 		10710
avr 4321.9
(-0.7) 		10668
(3) 		9457.1
(2.3) 		459.8
(-3) 		10208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14872
1 2 3 4 5 6 range
A 7640.9
(0.1)
P 		13693.3
(3)
P 		8437.3
(0.5)
P 		6208.2
(-0.5)
P 		4701.3
(-1.2)
P 		997.2
(-3)
P 		12696
B 8286.9
(-0.1)
P 		15869.6
(3)
P 		7373.2
(-0.5)
P 		4334.2
(-1.7)
P 		5688.5
(-1.1)
P 		1123.8
(-3)
P 		14746
C 8975.5
(0.3)
P 		15360.8
(3)
P 		6726
(-0.6)
P 		5836.9
(-1)
P 		5939.7
(-1)
P 		1146.8
(-3)
P 		14214
avr 8301.1
(0.1) 		14974.6
(3) 		7512.2
(-0.2) 		5459.8
(-1.1) 		5443.2
(-1.1) 		1089.3
(-3) 		13885
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3250
1 2 3 4 range
A 1701.2
(0.9)
P 		2221.5
(2.1)
P 		2598.4
(3)
P 		72
(-3)
P 		2526
B 1268.4
(-0.2)
P 		2607.2
(3)
P 		2062.3
(1.7)
P 		81.8
(-3)
P 		2525
C 1428.7
(-0.5)
P 		3224
(2.8)
P 		3322.2
(3)
P 		84.9
(-3)
P 		3237
avr 1466.1
(0.2) 		2684.2
(3) 		2661
(2.9) 		79.6
(-3) 		2605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5040
1 2 3 4 5 6 range
A 1408.5
(-1.5)
P 		4870
(3)
P 		1837.5
(-0.9)
P 		1574.5
(-1.3)
P 		1418.7
(-1.5)
P 		242.8
(-3)
P 		4627
B 2883.4
(0)
P 		5282.3
(3)
P 		1790.4
(-1.3)
P 		1148
(-2.1)
P 		2311.2
(-0.7)
P 		419.1
(-3)
P 		4863
C 3326.8
(1.1)
P 		4687
(3)
P 		1711.9
(-1.1)
P 		1173.8
(-1.9)
P 		1922
(-0.9)
P 		383.9
(-3)
P 		4303
avr 2539.6
(-0.1) 		4946.4
(3) 		1779.9
(-1.1) 		1298.8
(-1.8) 		1884
(-1) 		348.6
(-3) 		4598
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177131_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19515
Sequence Type Exemplar sequence
Representative Public ID Y19D10B.A NCBI
Target Description Y19D10B.A /REP_DB=WormBase Gene ID /WP=CE25224 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59424.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071236(11), NM_071240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071236 NCBI Caenorhabditis elegans Y19D10B.7 (Y19D10B.7) mRNA, complete cds. 11/11 None
NM_071240 NCBI Caenorhabditis elegans F15E11.13 (F15E11.13) mRNA, complete cds. 11/11 None
SNAP00000023998 ENSEMBL cdna:SNAP chromosome:CEL140:V:2321866:2322367:-1 11/11 None
GENEFINDER00000024001 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2318521:2322367:-1 11/11 None
SNAP00000041496 ENSEMBL cdna:SNAP chromosome:CEL140:V:2330257:2330758:1 11/11 None
GENEFINDER00000041504 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2330257:2333898:1 11/11 None
Y19D10B.7 ENSEMBL cdna:known chromosome:CEL140:V:2321778:2322394:-1 gene:Y19D10B.7 11/11 None
F15E11.13 ENSEMBL cdna:known chromosome:CEL140:V:2330257:2330758:1 gene:F15E11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2330256-2330758(+) 100.0 100.0
chrV:2321865-2322367(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y19D10B.7
F15E11.13
Entrez Gene 178709 Entrez gene
178714 Entrez gene
SwissProt Q9N565 EMBL-EBI
WormBase CE25224 Wormbase
CE25224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59425 Hypothetical protein Y19D10B.6 [Caenorhabditis elegans] ref|NP_503636.1| Y19D10B.6 [Caenorhabditis elegans] 0.0
blast NP_503898 T28A11.17 [Caenorhabditis elegans] gb|AAC48126.2| Hypothetical protein T28A11.17 [Caenorhabditis elegans] 0.0
blast AAB37589 Hypothetical protein T20D4.8 [Caenorhabditis elegans] ref|NP_503953.1| T20D4.8 [Caenorhabditis elegans] 0.0
blast NP_503642 F15E11.11 [Caenorhabditis elegans] gb|AAB94207.1| Hypothetical protein F15E11.11 [Caenorhabditis elegans] 1.0E-179
blast NP_503643 F15E11.2 [Caenorhabditis elegans] gb|AAB94199.1| Hypothetical protein F15E11.2 [Caenorhabditis elegans] 1.0E-110
blast AAF59424 Hypothetical protein Y19D10B.7 [Caenorhabditis elegans] ref|NP_503641.1| F15E11.13 [Caenorhabditis elegans] ref|NP_503637.1| Y19D10B.7 [Caenorhabditis elegans] gb|AAK71363.1| Hypothetical protein F15E11.13 [Caenorhabditis elegans] 3.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 6.7E-84
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.8E-22
Sequence
Target Sequence 
>C. ELEGANS:177131_S_AT
acaactcacgagacgcactgcaaaggtttcaattgataatcagactggaagtcacttcaa
gtttcaagtgacacataaatacactggatgggatgcggataagtctgatgttgtgatgtt
ccagcctgatgaagtcaaggaaatcttcaaaagtgtcgcctataacactggattcttgac
aactggagttgacaattggctagtggatggtacgatggttcaggagagaactgaagtgga
taacaaaggtcaccaaatcggaaagaaatcctacatagagcatgcgaaattcatcagtga
ctcgagatcatggaagcagcatatgctaacagctgaagatgacggaaaaactaccacgat
ccgtgttttcccaaccgaaattcacttcatctctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACTCACGAGACGCACTGCAAAG 203 113 36 Antisense
GAGACGCACTGCAAAGGTTTCAATT 638 393 45 Antisense
GGGATGCGGATAAGTCTGATGTTGT 514 495 125 Antisense
GTGATGTTCCAGCCTGATGAAGTCA 59 483 148 Antisense
AATCTTCAAAAGTGTCGCCTATAAC 328 169 177 Antisense
TAACACTGGATTCTTGACAACTGGA 611 639 198 Antisense
GGCTAGTGGATGGTACGATGGTTCA 628 537 233 Antisense
GAGCATGCGAAATTCATCAGTGACT 25 389 313 Antisense
GTGACTCGAGATCATGGAAGCAGCA 650 481 332 Antisense
GATGACGGAAAAACTACCACGATCC 479 395 373 Antisense
CAACCGAAATTCACTTCATCTCTCC 527 187 407 Antisense
Sequence Source Affymetrix Proprietary Database