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[177130_s_at]

Description Y48G1BL.D /REP_DB=WormBase Gene ID /WP=CE22181 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60690.1
Cluster 6grp_total > 80      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 34.2
(3)
A 		6.1
(-3)
A 		6.8
(-2.9)
A 		16.8
(-0.7)
A 		28
B 12.6
(-1.7)
A 		28.3
(0.5)
A 		45.9
(3)
A 		3.8
(-3)
A 		42
C 37.8
(-0.4)
A 		36.4
(-0.5)
A 		6.2
(-3)
A 		78.2
(3)
A 		72
avr 28.2
(0.9) 		23.6
(-1.2) 		19.6
(-3) 		32.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 9.5
(-1.5)
A 		4.6
(-3)
A 		24.6
(3)
A 		16
(0.4)
A 		15
(0.1)
A 		6.5
(-2.4)
A 		20
B 12.6
(-1)
A 		5
(-3)
A 		6.8
(-2.5)
A 		27.4
(3)
A 		21.7
(1.5)
A 		22.2
(1.6)
A 		22
C 4.8
(-2.5)
A 		3.9
(-2.7)
A 		6.1
(-2.4)
A 		46.3
(3)
A 		1.4
(-3)
A 		24.3
(0.1)
A 		45
avr 9
(-1.9) 		4.5
(-3) 		12.5
(-1.1) 		29.9
(3) 		12.7
(-1.1) 		17.7
(0.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.4
(3)
A 		1.3
(-3)
A 		1.8
(-2.7)
A 		2.5
(-2.4)
A 		11
B 4
(-1)
A 		7
(0.8)
A 		10.6
(3)
A 		0.8
(-3)
A 		10
C 12.5
(2.6)
A 		10.5
(1.5)
A 		2.2
(-3)
A 		13.2
(3)
A 		11
avr 9.6
(3) 		6.3
(-1.2) 		4.9
(-3) 		5.5
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.8
(-2.7)
A 		1.6
(-3)
A 		5.4
(3)
A 		4.1
(0.9)
A 		4.5
(1.6)
A 		1.6
(-3)
A 		4
B 4.4
(-0.7)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		7.3
(1.8)
A 		8.8
(3)
A 		8.3
(2.6)
A 		7
C 1.8
(-2.1)
A 		1.2
(-2.5)
A 		1.6
(-2.3)
A 		9.3
(3)
A 		0.5
(-3)
A 		8.1
(2.2)
A 		9
avr 2.7
(-1.7) 		1.5
(-3) 		2.9
(-1.4) 		6.9
(3) 		4.6
(0.4) 		6
(2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177130_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18841
Sequence Type Exemplar sequence
Representative Public ID Y48G1BL.D NCBI
Target Description Y48G1BL.D /REP_DB=WormBase Gene ID /WP=CE22181 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60690.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G1BL.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G1BL.D Y48G1BL.D /REP_DB=WormBase Gene ID /WP=CE22181 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60690.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058305 11/11 Negative Strand Matching Probes A 
NM_064373 10/11 Negative Strand Matching Probes A 
NM_068418 10/11 Negative Strand Matching Probes A 
NM_058294 11/11 Negative Strand Matching Probes A 
SNAP00000016207 11/11 Negative Strand Matching Probes None
GENEFINDER00000016215 11/11 Negative Strand Matching Probes None
SNAP00000014671 11/11 Negative Strand Matching Probes None
GENEFINDER00000014675 11/11 Negative Strand Matching Probes None
SNAP00000012460 10/11 Negative Strand Matching Probes None
GENEFINDER00000012467 10/11 Negative Strand Matching Probes None
Y48G1BL.1 11/11 Negative Strand Matching Probes A 
Y48G1BM.1 11/11 Negative Strand Matching Probes A 
F18A11.6 10/11 Negative Strand Matching Probes A 
B0273.3 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5485320-5485778(+) 98.68 98.68
chrI:216449-216905(-) 100.0 100.0
chrI:252542-253000(-) 98.9 98.9
chrII:13044265-13044723(-) 99.12 99.12
Sequence
Target Sequence 
>C. ELEGANS:177130_S_AT
acggccacttatttttcgccatatccttgaacgacggctttttctcgctaaaatcgtcgg
aaaacgagaaatcgatggggcacgagaacgcgtttttcagatcgcgaagcgtgtgatctc
cggtgagctcgagccgatccgtgatcttcatcaaacgtccgaggcgaatctcgtggtatt
gaagggtacgggtgtagccgagatacacggaaatgctgatgatcaggtccttttccggat
ggtccatgttcagttcgacttttggcgtgggcaaggcggcttctccaacggaaaccactt
cttccttcacctcgtcgagctcatcatccataatttcctctttgataaaagtcggaggca
tcagatgaggcgatttccttgccaacgctctatgatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCCACTTATTTTTCGCCATATC 26 95 33 Antisense
TATCCTTGAACGACGGCTTTTTCTC 515 649 54 Antisense
GGCTTTTTCTCGCTAAAATCGTCGG 149 509 68 Antisense
GATGGGGCACGAGAACGCGTTTTTC 146 407 106 Antisense
GCGTTTTTCAGATCGCGAAGCGTGT 405 291 122 Antisense
TGCTGATGATCAGGTCCTTTTCCGG 234 581 246 Antisense
TCCTTTTCCGGATGGTCCATGTTCA 56 593 260 Antisense
TCTCCAACGGAAACCACTTCTTCCT 521 605 314 Antisense
GTCGAGCTCATCATCCATAATTTCC 583 473 346 Antisense
GAGGCATCAGATGAGGCGATTTCCT 336 405 387 Antisense
TCCTTGCCAACGCTCTATGATCGAT 599 591 408 Antisense
Sequence Source Affymetrix Proprietary Database