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[177128_at]

Description Y51H7BL.B /REP_DB=WormBase Gene ID /WP=CE25371 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59499.1
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 03      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 12      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1341
1 2 3 4 range
A 2326.6
(2.9)
P 		2342.4
(3)
P 		2120.7
(1.3)
P 		1542.2
(-3)
P 		800
B 2687.8
(3)
P 		2197.6
(0.7)
P 		1910.4
(-0.7)
P 		1426.9
(-3)
P 		1261
C 2088.6
(1.5)
P 		2335.7
(3)
P 		1957.9
(0.7)
P 		1346.5
(-3)
P 		989
avr 2367.7
(3) 		2291.9
(2.5) 		1996.3
(0.6) 		1438.5
(-3) 		929

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1713
1 2 3 4 5 6 range
A 2887.4
(3)
P 		2054.7
(-0.4)
P 		1814.1
(-1.4)
P 		1724.2
(-1.7)
P 		1415.7
(-3)
P 		1497.6
(-2.7)
P 		1472
B 2428.4
(3)
P 		2290.1
(2.2)
P 		1978.7
(0.5)
P 		1839.2
(-0.2)
P 		1482.3
(-2.2)
P 		1340.6
(-3)
P 		1088
C 2592.2
(3)
P 		2192.4
(1.3)
P 		2205
(1.4)
P 		1641.3
(-1)
P 		1546.6
(-1.4)
P 		1174
(-3)
P 		1418
avr 2636
(3) 		2179.1
(0.9) 		1999.3
(0.1) 		1734.9
(-1.2) 		1481.5
(-2.3) 		1337.4
(-3) 		1299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 847.1
(3)
P 		508.5
(-0.3)
P 		554.4
(0.2)
P 		225.7
(-3)
P 		621
B 857.1
(3)
P 		542.8
(-0.4)
P 		442.7
(-1.5)
P 		304.1
(-3)
P 		553
C 691.4
(3)
P 		671.5
(2.7)
P 		682.4
(2.9)
P 		227
(-3)
P 		464
avr 798.5
(3) 		574.3
(0.5) 		559.8
(0.4) 		252.3
(-3) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 532.3
(-0.3)
P 		730.7
(3)
P 		395.1
(-2.5)
P 		437.3
(-1.8)
P 		427.2
(-2)
P 		364.6
(-3)
P 		366
B 845
(3)
P 		762.3
(1.6)
P 		480.5
(-3)
P 		487.1
(-2.9)
P 		602.3
(-1)
P 		499.9
(-2.7)
P 		365
C 960.8
(3)
P 		669
(0.2)
P 		561.2
(-0.8)
P 		330.1
(-3)
P 		500.5
(-1.4)
P 		393
(-2.4)
P 		631
avr 779.4
(3) 		720.7
(2) 		478.9
(-2) 		418.2
(-3) 		510
(-1.5) 		419.2
(-3) 		361
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18888
Sequence Type Exemplar sequence
Representative Public ID Y51H7BL.B NCBI
Target Description Y51H7BL.B /REP_DB=WormBase Gene ID /WP=CE25371 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59499.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061580(11), NM_061581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061580 NCBI Caenorhabditis elegans H17B01.1a (H17B01.1) mRNA, complete cds. 11/11 A 
NM_061581 NCBI Caenorhabditis elegans H17B01.1b (H17B01.1) mRNA, complete cds. 11/11 A 
H17B01.1a ENSEMBL cdna:known chromosome:CEL140:II:1504572:1509828:1 gene:H17B01.1 11/11 None
H17B01.1b ENSEMBL cdna:known chromosome:CEL140:II:1504760:1509693:1 gene:H17B01.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1506577-1509692(+) 100.0 100.0
Public Domain and Genome References
Ensembl H17B01.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31539 Hypothetical protein H17B01.1a [Caenorhabditis elegans] ref|NP_493981.1| H17B01.1a [Caenorhabditis elegans] 0.0
blast AAK31540 Hypothetical protein H17B01.1b [Caenorhabditis elegans] ref|NP_493982.1| H17B01.1b [Caenorhabditis elegans] 0.0
blast CAE62888 Hypothetical protein CBG07075 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-126
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493981.1 12 27-49,81-103,110-128,138-160,173-192,202-224,281-303,323-345,354-376,389-411,424-446,451-473
NP_493982.1 12 45-67,99-121,128-146,156-178,191-210,220-242,299-321,341-363,372-394,407-429,442-464,469-491
H17B01.1a 12 27-49,81-103,110-128,138-160,173-192,202-224,281-303,323-345,354-376,389-411,424-446,451-473
H17B01.1b 12 45-67,99-121,128-146,156-178,191-210,220-242,299-321,341-363,372-394,407-429,442-464,469-491
Sequence
Target Sequence 
>C. ELEGANS:177128_AT
tcgccattatgatgatgctcgcccaacagctgtccggaatcaacgtcgcaatgttctact
cgactgtaattttccgtggagccggtttgactggaaatgagccattctacgcgacaattg
gtatgggggctgtgaatgtgattatgactctgatctcggtctggcttgtggaccacccga
aattcggccgccgctcacttttgctggccggtttgactggaatgttcgtgtctacactgc
ttctcgttggtgcgctgactattcagaacagtggaggagacaagtgggccagctactcag
ccatcggatttgtgctccttttcgtcatctcctttgccaccggacccggagccattccat
ggttcttcgtctccgaaatcttcgactcgtcggctcgtggaaacgcgaactccatcgctg
ttatggtcaactgggccgccaatttgctcgtcggactcactttcttgccaatcaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCATTATGATGATGCTCGCCCA 520 599 407 Antisense
AGCTGTCCGGAATCAACGTCGCAAT 365 79 434 Antisense
TCGACTGTAATTTTCCGTGGAGCCG 607 599 466 Antisense
TGAGCCATTCTACGCGACAATTGGT 290 569 504 Antisense
TTATGACTCTGATCTCGGTCTGGCT 107 679 548 Antisense
CTTTTGCTGGCCGGTTTGACTGGAA 478 219 604 Antisense
AATGTTCGTGTCTACACTGCTTCTC 87 165 627 Antisense
AGACAAGTGGGCCAGCTACTCAGCC 220 73 684 Antisense
TCTTCGACTCGTCGGCTCGTGGAAA 413 617 785 Antisense
GGAAACGCGAACTCCATCGCTGTTA 235 527 805 Antisense
GACTCACTTTCTTGCCAATCAATAA 330 373 860 Antisense
Sequence Source Affymetrix Proprietary Database