[Home] | [Total List]

[177127_at]

Description Y19D10B.C /REP_DB=WormBase Gene ID /WP=CE25226 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59426.1
Cluster 6grp_total > 24      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 9.6
(-3)
A 		24.1
(-0.7)
A 		37.1
(1.4)
A 		46.8
(3)
A 		37
B 24.3
(-1.6)
A 		61.3
(3)
A 		43.7
(0.8)
A 		13.5
(-3)
A 		48
C 26.4
(-1.7)
A 		67.1
(1.4)
A 		10.1
(-3)
A 		88.2
(3)
A 		78
avr 20.1
(-3) 		50.8
(3) 		30.3
(-1) 		49.5
(2.7) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 57.3
(3)
A 		24.9
(-0.9)
A 		36.2
(0.4)
A 		9
(-2.9)
A 		10.5
(-2.7)
A 		7.8
(-3)
A 		50
B 13.4
(-2.1)
A 		52.7
(3)
A 		25.9
(-0.5)
A 		6.6
(-3)
A 		7.9
(-2.8)
A 		6.6
(-3)
A 		46
C 35.9
(3)
A 		12.5
(-1.4)
A 		10.1
(-1.9)
A 		4.2
(-3)
A 		9.3
(-2)
A 		10.5
(-1.8)
A 		32
avr 35.5
(3) 		30
(1.9) 		24.1
(0.6) 		6.6
(-3) 		9.2
(-2.5) 		8.3
(-2.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.5
(-3)
A 		5.2
(-1.4)
A 		9.7
(3)
A 		6.9
(0.3)
A 		6
B 7.8
(-0.6)
A 		15.1
(3)
A 		10.1
(0.5)
A 		2.9
(-3)
A 		12
C 8.7
(-1)
A 		19.3
(3)
A 		3.5
(-3)
A 		14.9
(1.3)
A 		16
avr 6.7
(-3) 		13.2
(3) 		7.8
(-2) 		8.2
(-1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.6
(3)
A 		8.8
(1.8)
A 		7.9
(1.1)
A 		2.3
(-2.7)
A 		3.2
(-2.1)
A 		1.9
(-3)
A 		9
B 4.7
(-1.9)
A 		17.5
(3)
A 		6.3
(-1.3)
A 		1.8
(-3)
A 		3.2
(-2.5)
A 		2.5
(-2.7)
A 		16
C 13.3
(3)
A 		3.8
(-1.6)
A 		2.6
(-2.1)
A 		0.8
(-3)
A 		3
(-1.9)
A 		3.5
(-1.7)
A 		13
avr 9.5
(2.6) 		10
(3) 		5.6
(-0.1) 		1.6
(-3) 		3.1
(-1.9) 		2.6
(-2.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19509
Sequence Type Exemplar sequence
Representative Public ID Y19D10B.C NCBI
Target Description Y19D10B.C /REP_DB=WormBase Gene ID /WP=CE25226 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59426.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071234 NCBI Caenorhabditis elegans Y19D10B.5 (Y19D10B.5) mRNA, complete cds. 11/11 None
GENEFINDER00000023999 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2313790:2318258:-1 11/11 None
Y19D10B.5 ENSEMBL cdna:known chromosome:CEL140:V:2313831:2318258:-1 gene:Y19D10B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2312249-2318258(-) 96.76 100.0
Public Domain and Genome References
Gene Title
Ensembl Y19D10B.5
Entrez Gene 189496 Entrez gene
SwissProt Q966C8 EMBL-EBI
WormBase CE27596 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68424 Hypothetical protein Y19D10B.5 [Caenorhabditis elegans] ref|NP_503635.1| Y19D10B.5 [Caenorhabditis elegans] 0.0
blast AAK68424 Hypothetical protein Y19D10B.5 [Caenorhabditis elegans] ref|NP_503635.1| Y19D10B.5 [Caenorhabditis elegans] 1.0E-123
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 4.0E-86
blast NP_503643 F15E11.2 [Caenorhabditis elegans] gb|AAB94199.1| Hypothetical protein F15E11.2 [Caenorhabditis elegans] 2.0E-77
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 7.0E-59
blast AAB37589 Hypothetical protein T20D4.8 [Caenorhabditis elegans] ref|NP_503953.1| T20D4.8 [Caenorhabditis elegans] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.5E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.0E-20
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 2.4E-22
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503635.1 1 544-566
Y19D10B.5 1 544-566
Sequence
Target Sequence 
>C. ELEGANS:177127_AT
atggttcccgatcgatatttttgtatttctccccaagaaatgctgaattttttaagcagc
gataatgttcttacacccgaaattaacggaaagtactgtgatctaccaagttccgtgagt
aacggaacggtttgtaattccacgtcactaactgatggatgtactcaaatatttggaagc
ttggtaataggacctgaaaatgagcaatttgtgagccaactaaaatatgtggaaatgata
tttggacggctcgttgtcaataacacaaatttaacaaatatcgattttttgcaaagtctg
aagtatatttattctcttgatggttcaaccccagcgatttccgttgaaaataacccattt
ctctctaatttttcttttccgaacttgaagctagccaaaacaaaaggccgctctacaatt
tggttcaacaaaaatagtgaggcactgtcttcggattcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTCCCGATCGATATTTTTGTA 639 49 1114 Antisense
GATATTTTTGTATTTCTCCCCAAGA 439 425 1127 Antisense
GCAGCGATAATGTTCTTACACCCGA 281 315 1169 Antisense
GTGATCTACCAAGTTCCGTGAGTAA 680 483 1211 Antisense
GATATTTGGACGGCTCGTTGTCAAT 337 427 1350 Antisense
TTCTCTTGATGGTTCAACCCCAGCG 15 691 1425 Antisense
TCAACCCCAGCGATTTCCGTTGAAA 671 627 1438 Antisense
TAACCCATTTCTCTCTAATTTTTCT 588 637 1464 Antisense
TCTTTTCCGAACTTGAAGCTAGCCA 130 615 1486 Antisense
AGGCCGCTCTACAATTTGGTTCAAC 571 53 1518 Antisense
TGAGGCACTGTCTTCGGATTCAGCA 527 567 1551 Antisense
Sequence Source Affymetrix Proprietary Database