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[177126_at]

Description Y48G1BL.F /REP_DB=WormBase Gene ID /WP=CE22176 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60692.1
Cluster 6grp_high1_10_10 > 35      6grp_total > 13      4grp_total > 53      6grp_cgc > 40      6grp_high1_sub > 02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 102.8
(3)
M 		78.7
(-0.3)
A 		83
(0.3)
A 		58.5
(-3)
A 		44
B 119.5
(3)
P 		101.2
(1.2)
P 		70.5
(-1.7)
A 		57.2
(-3)
A 		62
C 100.7
(-0)
P 		130.1
(3)
P 		84.4
(-1.7)
M 		71.5
(-3)
P 		59
avr 107.7
(3) 		103.3
(2.4) 		79.3
(-0.8) 		62.4
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 73.5
(-1)
A 		78.9
(-0.6)
M 		86.7
(0)
P 		124.5
(3)
P 		47.7
(-3)
A 		75.3
(-0.8)
A 		77
B 120
(3)
P 		103.1
(0.5)
P 		82.8
(-2.5)
P 		98.7
(-0.2)
P 		85.2
(-2.2)
A 		79.5
(-3)
P 		41
C 111.7
(1.3)
P 		132.3
(3)
P 		98.1
(0.2)
A 		96.9
(0.1)
P 		58.4
(-3)
P 		100.1
(0.4)
P 		74
avr 101.7
(2.3) 		104.8
(2.7) 		89.2
(0.6) 		106.7
(3) 		63.8
(-3) 		85
(-0) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 37.4
(3)
M 		17.1
(-1.2)
A 		21.7
(-0.3)
A 		8.6
(-3)
A 		29
B 38.1
(3)
P 		25
(-0)
P 		16.3
(-2.1)
A 		12.2
(-3)
A 		26
C 33.3
(2)
P 		37.4
(3)
P 		29.4
(1.1)
M 		12
(-3)
P 		25
avr 36.3
(3) 		26.5
(0.7) 		22.5
(-0.3) 		10.9
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.6
(-3)
A 		28.1
(1.8)
M 		18.9
(-1.2)
P 		31.6
(3)
P 		14.4
(-2.7)
A 		18.3
(-1.4)
A 		18
B 41.8
(3)
P 		34.3
(0.9)
P 		20.1
(-3)
P 		26.1
(-1.3)
P 		34.6
(1)
A 		29.7
(-0.3)
P 		22
C 41.4
(3)
P 		40.4
(2.7)
P 		25
(-1.4)
A 		19.5
(-2.8)
P 		18.9
(-3)
P 		33.5
(0.9)
P 		23
avr 32.3
(2.1) 		34.3
(3) 		21.3
(-3) 		25.7
(-1) 		22.6
(-2.4) 		27.2
(-0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18837
Sequence Type Exemplar sequence
Representative Public ID Y48G1BL.F NCBI
Target Description Y48G1BL.F /REP_DB=WormBase Gene ID /WP=CE22176 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60692.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026605, NM_058292
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000016206 ENSEMBL cdna:SNAP chromosome:CEL140:I:203067:211667:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058292 4/11 Cross Hyb Matching Probes None
NM_001026605 6/11 Cross Hyb Matching Probes None
GENEFINDER00000016211 4/11 Cross Hyb Matching Probes None
Y48G1BL.2 4/11 Cross Hyb Matching Probes None
Y48G1BL.7 6/11 Cross Hyb Matching Probes C 
F18A11.7 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:203036-211395(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490693 ATM (ataxia telangectasia mutated) family member (atm-1) [Caenorhabditis elegans] gb|AAF60692.2| Atm (ataxia telangectasia mutated) family protein 1 [Caenorhabditis elegans] 0.0
blast CAE74307 Hypothetical protein CBG22015 [Caenorhabditis briggsae] 0.0
blast NP_001021776 Y48G1BL.7 [Caenorhabditis elegans] gb|AAT39976.1| Hypothetical protein Y48G1BL.7 [Caenorhabditis elegans] 4.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 2.4E-14
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 3.3E-5
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 1.4E-19
Sequence
Target Sequence 
>C. ELEGANS:177126_AT
ggaaaggtaatcctcggtgtcgcctctgctctactccgcgaaacgatgacaaatttccga
gaagccgaacaggctgccggccgcccgtcctacatttctgaaatggccatcggacggctt
cgagaaaagctacggggcaccgatgacgggcttggcaattttaagttctctagctacaaa
ttgaaccaatttagaggtttcaaaattacatcaaaaccgaatagcctaatcgcatgtgtc
attgaaaaatcattttcgacatttcttactgctattatgtgctttttacacgatccacaa
acatttaaagacagcaatcgaacactggattctgatatttttggagacaggctttgtaag
gataaaaacgaatttaccgagttgaagaagatcggaagctggcagaaaatgtcgattttc
actgtggttcggaatccgatcgatcggagatgcgagttctcgtctcatcttgtcaaatac
caaatttttcaattagacggtgcaaatttcacaaatcaacttcttggactgctgtccgag
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAGGTAATCCTCGGTGTCGCCT 401 525 1708 Antisense
TGCTCTACTCCGCGAAACGATGACA 587 579 1734 Antisense
CGAGAAGCCGAACAGGCTGCCGGCC 323 251 1765 Antisense
GAAATGGCCATCGGACGGCTTCGAG 110 361 1807 Antisense
AAGCTACGGGGCACCGATGACGGGC 17 3 1834 Antisense
GAATAGCCTAATCGCATGTGTCATT 455 325 1926 Antisense
TCATTTTCGACATTTCTTACTGCTA 668 619 1957 Antisense
GTGCTTTTTACACGATCCACAAACA 674 479 1986 Antisense
TTTTCACTGTGGTTCGGAATCCGAT 2 675 2123 Antisense
GTTCTCGTCTCATCTTGTCAAATAC 610 443 2163 Antisense
CAACTTCTTGGACTGCTGTCCGAGC 423 189 2224 Antisense
Sequence Source Affymetrix Proprietary Database