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[177125_at]

Description R13.4 /REP_DB=WormBase Gene ID /WP=CE06321 /TR=Q21970 /GB=CAA97439.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 17.2
(-2.9)
A 		30.5
(-2.5)
A 		14.9
(-3)
A 		219.1
(3)
P 		204
B 22.6
(-2.8)
A 		23.1
(-2.7)
A 		11.8
(-3)
A 		272.9
(3)
P 		261
C 17
(-3)
A 		24.5
(-2.7)
A 		19.2
(-2.9)
A 		190.2
(3)
P 		173
avr 18.9
(-2.9) 		26
(-2.7) 		15.3
(-3) 		227.4
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 15.6
(-2.9)
A 		43.7
(-2)
A 		11.9
(-3)
A 		16.3
(-2.9)
A 		13.6
(-2.9)
A 		205.9
(3)
P 		194
B 16.1
(-2.8)
A 		7.2
(-3)
A 		18.7
(-2.7)
A 		14
(-2.8)
A 		12.2
(-2.9)
A 		224.4
(3)
P 		217
C 6.8
(-3)
A 		36
(-2.5)
A 		15.7
(-2.8)
A 		6
(-3)
A 		28.3
(-2.6)
A 		349.7
(3)
P 		344
avr 12.8
(-3) 		29
(-2.6) 		15.4
(-2.9) 		12.1
(-3) 		18
(-2.9) 		260
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 6.3
(-2.5)
A 		6.6
(-2.4)
A 		3.9
(-3)
A 		32.1
(3)
P 		28
B 7.2
(-2.5)
A 		5.7
(-2.7)
A 		2.7
(-3)
A 		58.2
(3)
P 		56
C 5.6
(-3)
A 		7
(-2.7)
A 		6.7
(-2.8)
A 		32.1
(3)
P 		27
avr 6.4
(-2.7) 		6.4
(-2.7) 		4.4
(-3) 		40.8
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 2.9
(-3)
A 		15.5
(-1.4)
A 		2.6
(-3)
A 		4.1
(-2.8)
A 		4.1
(-2.8)
A 		50.1
(3)
P 		48
B 5.6
(-2.8)
A 		2.4
(-3)
A 		4.5
(-2.8)
A 		3.7
(-2.9)
A 		5
(-2.8)
A 		83.7
(3)
P 		81
C 2.5
(-2.9)
A 		11
(-2.5)
A 		4
(-2.9)
A 		1.2
(-3)
A 		9.1
(-2.6)
A 		117.1
(3)
P 		116
avr 3.7
(-2.9) 		9.6
(-2.5) 		3.7
(-2.9) 		3
(-3) 		6.1
(-2.8) 		83.6
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9925
Sequence Type Exemplar sequence
Representative Public ID R13.4 NCBI
Target Description R13.4 /REP_DB=WormBase Gene ID /WP=CE06321 /TR=Q21970 /GB=CAA97439.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069603 NCBI Caenorhabditis elegans R13.4 (R13.4) mRNA, complete cds. 11/11 None
GENEFINDER00000041979 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10812400:10824964:1 11/11 None
R13.4 ENSEMBL cdna:known chromosome:CEL140:IV:10812399:10814204:1 gene:R13.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041971 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10812405-10814210(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13.4
Entrez Gene 3565074 Entrez gene
SwissProt Q21970 EMBL-EBI
WormBase CE06321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97440 Hypothetical protein R13.1 [Caenorhabditis elegans] ref|NP_502005.1| R13.1 [Caenorhabditis elegans] 0.0
blast CAE70843 Hypothetical protein CBG17627 [Caenorhabditis briggsae] 0.0
blast CAA97439 Hypothetical protein R13.4 [Caenorhabditis elegans] ref|NP_502004.1| R13.4 [Caenorhabditis elegans] 1.0E-93
blast CAA97439 Hypothetical protein R13.4 [Caenorhabditis elegans] ref|NP_502004.1| R13.4 [Caenorhabditis elegans] 1.0E-80
blast CAE70842 Hypothetical protein CBG17623 [Caenorhabditis briggsae] 4.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 1.8E-36
Sequence
Target Sequence 
>C. ELEGANS:177125_AT
gagcacgtggccacaacgaacagtcgacttgcttcactcagagctaacctaatcgatgtg
tcaacatttccggaagcgtgtagcgaacttaccaaatggtgtcaagatcaacgagctttt
actgctcactttgaggataacttgatgatggctttagaagcggcaatggattatgggacc
agggaaaattacgattatatgcttactcatggcctagttggagcttgtttcacacaccgg
aagcatctatcaaagccagcagccactcgaatcggccggtggtacgagcaaatgcgtcga
ttaaaaaagaacggtggaaaacgaaaacgtgctccaccaaaacccaaagatccagcatta
caagcttcatctcaaccgaccggaacacttcctgttctaacgtcaccttcttgccctcaa
aatggacaacaactgccaactgaaaacaacaacttcatgttctctccgaattcttctgac
gggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACGTGGCCACAACGAACAGTC 587 383 34 Antisense
AACGAACAGTCGACTTGCTTCACTC 196 145 48 Antisense
GGCCTAGTTGGAGCTTGTTTCACAC 645 543 244 Antisense
GTTTCACACACCGGAAGCATCTATC 516 449 260 Antisense
TATCAAAGCCAGCAGCCACTCGAAT 14 655 281 Antisense
TCGAATCGGCCGGTGGTACGAGCAA 368 599 300 Antisense
CATTACAAGCTTCATCTCAACCGAC 704 213 389 Antisense
GGAACACTTCCTGTTCTAACGTCAC 566 525 415 Antisense
CACCTTCTTGCCCTCAAAATGGACA 618 201 437 Antisense
ACAACAACTTCATGTTCTCTCCGAA 166 113 479 Antisense
TCTCTCCGAATTCTTCTGACGGGTT 587 589 494 Antisense
Sequence Source Affymetrix Proprietary Database