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[177123_s_at]

Description M7.10 /REP_DB=WormBase Gene ID /WP=CE03490 /TR=Q21588 /GB=CAA92742.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 62      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 14.9
(-2.4)
A 		17.1
(-2.1)
A 		55.1
(3)
A 		10.2
(-3)
A 		45
B 51.9
(3)
A 		4.9
(-3)
A 		22.1
(-0.8)
A 		4.6
(-3)
A 		47
C 7.2
(-0.9)
A 		6.7
(-1.2)
A 		14
(3)
A 		3.5
(-3)
A 		11
avr 24.7
(1.6) 		9.6
(-2.1) 		30.4
(3) 		6.1
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 15.8
(-1.4)
A 		29.7
(0.4)
A 		19.4
(-1)
A 		10.1
(-2.2)
A 		49
(3)
A 		4.1
(-3)
A 		45
B 4.4
(-3)
A 		60.8
(2.9)
A 		47.9
(1.6)
A 		4.1
(-3)
A 		61.8
(3)
A 		41.2
(0.9)
A 		58
C 8.1
(-2.7)
A 		10.3
(-2.4)
A 		6.4
(-3)
A 		28.3
(0.4)
A 		44.2
(2.8)
A 		45.4
(3)
A 		39
avr 9.4
(-3) 		33.6
(0.4) 		24.6
(-0.8) 		14.2
(-2.3) 		51.7
(3) 		30.2
(-0) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.4
(-1.2)
A 		3.7
(-2)
A 		14.4
(3)
A 		1.5
(-3)
A 		13
B 16.6
(3)
A 		1.2
(-2.9)
A 		5.1
(-1.4)
A 		1
(-3)
A 		16
C 2.4
(-0.5)
A 		1.9
(-1.2)
A 		4.9
(3)
A 		0.6
(-3)
A 		4
avr 8.1
(3) 		2.3
(-1.9) 		8.1
(3) 		1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.9
(-2.2)
A 		10.6
(1.2)
A 		4.2
(-1.6)
A 		2.6
(-2.3)
A 		14.8
(3)
A 		1
(-3)
A 		14
B 1.5
(-2.9)
A 		20.2
(1.8)
A 		11.6
(-0.4)
A 		1.1
(-3)
A 		25.1
(3)
A 		15.4
(0.6)
A 		24
C 3
(-2.4)
A 		3.1
(-2.3)
A 		1.6
(-3)
A 		5.7
(-1.2)
A 		14.3
(2.6)
A 		15.2
(3)
A 		14
avr 2.5
(-3) 		11.3
(0.4) 		5.8
(-1.7) 		3.1
(-2.8) 		18.1
(3) 		10.5
(0.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177123_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9446
Sequence Type Exemplar sequence
Representative Public ID M7.10 NCBI
Target Description M7.10 /REP_DB=WormBase Gene ID /WP=CE03490 /TR=Q21588 /GB=CAA92742.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069672 NCBI Caenorhabditis elegans M7.10 (M7.10) mRNA, complete cds. 11/11 None
SNAP00000010389 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11101934:11102667:-1 11/11 None
GENEFINDER00000010393 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11101934:11102667:-1 11/11 None
M7.10 ENSEMBL cdna:known chromosome:CEL140:IV:11101934:11102667:-1 gene:M7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11101939-11102673(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M7.10
Entrez Gene 178010 Entrez gene
SwissProt Q21588 EMBL-EBI
WormBase CE03490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92742 Hypothetical protein M7.10 [Caenorhabditis elegans] ref|NP_502073.1| M7.10 [Caenorhabditis elegans] 4.0E-79
blast CAE62000 Hypothetical protein CBG06008 [Caenorhabditis briggsae] 3.0E-33
blast AAB37546 Hypothetical protein C28C12.3 [Caenorhabditis elegans] ref|NP_501449.1| C28C12.3 [Caenorhabditis elegans] sp|P50437|YY23_CAEEL Hypothetical protein C28C12.3 in chromosome IV 6.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.3E-62
Sequence
Target Sequence 
>C. ELEGANS:177123_S_AT
gcgattgcattagctcgtccagatggaccaggaagtccaaatcgcgctgataaaccagaa
ggaaagaaaggaccaggtggagcaccagaaggaccacacttctcaagaccacttccacca
ttcattgccaacctcagcatggaagctaagatcgagtttgattcagttttcaagaataaa
agtttgactcttgctcaaattgatgctcaagatgctcttctggttgaaaagtatggagtt
gctgcagtttacaaagaattcaaagctaatgtaaccgcctatcttgctgaagtgaagaaa
aaccaaacaaaagtgatcagtaatttgtcttctgtcgctgaaaagatcgatgctattttg
tcaaacaaggaccaaacacgcaaggctcaacatgaagccctcattgctcttcgcaaagaa
ttccctattgagtttgatgttctcagatttattagctctccaaagagagacccaaaagga
ccaggaggactaagaagaccaaagggaccaaaaggtccaaaagggccaggaggaccacat
ggaaagccgccaggaggaccaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATTGCATTAGCTCGTCCAGATG 131 291 52 Antisense
GAAGTCCAAATCGCGCTGATAAACC 554 335 83 Antisense
GAGCACCAGAAGGACCACACTTCTC 99 389 131 Antisense
CCATTCATTGCCAACCTCAGCATGG 376 269 169 Antisense
ATGCTCAAGATGCTCTTCTGGTTGA 441 43 254 Antisense
GCTAATGTAACCGCCTATCTTGCTG 252 249 316 Antisense
AGTAATTTGTCTTCTGTCGCTGAAA 16 63 370 Antisense
GGACCAAACACGCAAGGCTCAACAT 687 521 420 Antisense
GGCTCAACATGAAGCCCTCATTGCT 138 539 435 Antisense
GTTCTCAGATTTATTAGCTCTCCAA 637 443 490 Antisense
GGAAAGCCGCCAGGAGGACCAAAGA 98 527 592 Antisense
Sequence Source Affymetrix Proprietary Database