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[177121_at]

Description M7.13 /REP_DB=WormBase Gene ID /WP=CE12224 /TR=O17973 /GB=CAA92751.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 17      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 35.1
(-0.7)
A 		52.2
(3)
A 		24.4
(-3)
A 		36.6
(-0.4)
A 		28
B 21.4
(-0.7)
A 		6.1
(-3)
A 		46.6
(3)
A 		36.3
(1.5)
A 		41
C 10.7
(-3)
A 		31.5
(-0.3)
A 		12.6
(-2.8)
A 		56.4
(3)
A 		46
avr 22.4
(-3) 		29.9
(-0.8) 		27.9
(-1.4) 		43.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.5
(-3)
A 		25.1
(1.4)
A 		33.3
(3)
A 		23.1
(1)
A 		29.3
(2.2)
A 		29.2
(2.2)
A 		31
B 23.8
(0.7)
A 		4.5
(-3)
A 		30.8
(2.1)
A 		26.5
(1.2)
A 		8.8
(-2.2)
A 		35.7
(3)
P 		31
C 21.4
(-0.6)
A 		26.7
(0.6)
A 		26.9
(0.6)
A 		10.3
(-3)
A 		38
(3)
P 		32
(1.7)
A 		28
avr 15.9
(-3) 		18.8
(-1.9) 		30.3
(2.3) 		20
(-1.5) 		25.4
(0.5) 		32.3
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.8
(3)
A 		11.3
(1.8)
A 		6.4
(-2.2)
A 		5.4
(-3)
A 		7
B 6.8
(0.4)
A 		1.5
(-3)
A 		10.8
(3)
A 		7.7
(1)
A 		9
C 3.5
(-3)
A 		9
(2.5)
A 		4.4
(-2.1)
A 		9.5
(3)
A 		6
avr 7.7
(3) 		7.3
(-1.8) 		7.2
(-3) 		7.5
(0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.5
(-3)
A 		8.9
(3)
A 		7.2
(1.8)
A 		5.9
(0.9)
A 		8.8
(2.9)
A 		7.1
(1.7)
A 		8
B 8.3
(0.5)
A 		1.5
(-3)
A 		7.5
(0.1)
A 		7
(-0.2)
A 		3.6
(-1.9)
A 		13.3
(3)
P 		12
C 7.9
(0.4)
A 		8.1
(0.5)
A 		6.8
(-0.2)
A 		2.1
(-3)
A 		12.3
(3)
P 		10.7
(2.1)
A 		10
avr 5.6
(-2.3) 		6.2
(-1.7) 		7.2
(-0.6) 		5
(-3) 		8.2
(0.6) 		10.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9065
Sequence Type Exemplar sequence
Representative Public ID M7.13 NCBI
Target Description M7.13 /REP_DB=WormBase Gene ID /WP=CE12224 /TR=O17973 /GB=CAA92751.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069670(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069670 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-3) (str-3) mRNA, complete cds. 9/11 None
SNAP00000010387 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11098420:11100196:-1 9/11 None
GENEFINDER00000010395 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11096750:11100343:-1 9/11 None
M7.13 ENSEMBL cdna:known chromosome:CEL140:IV:11098531:11100343:-1 gene:M7.13 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11098536-11100349(-) 91.03 97.1
Public Domain and Genome References
Gene Title
Gene Symbol str-3
Ensembl M7.13
Entrez Gene 187459 Entrez gene
SwissProt O17973 EMBL-EBI
WormBase CE28632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92751 Hypothetical protein M7.13 [Caenorhabditis elegans] ref|NP_502071.1| Seven TM Receptor family member (str-3) [Caenorhabditis elegans] 0.0
blast CAA92751 Hypothetical protein M7.13 [Caenorhabditis elegans] ref|NP_502071.1| Seven TM Receptor family member (str-3) [Caenorhabditis elegans] 1.0E-175
blast CAA92751 Hypothetical protein M7.13 [Caenorhabditis elegans] ref|NP_502071.1| Seven TM Receptor family member (str-3) [Caenorhabditis elegans] 1.0E-146
blast CAA92749 Hypothetical protein M7.12 [Caenorhabditis elegans] ref|NP_502070.2| M7.12 [Caenorhabditis elegans] 1.0E-117
blast NP_504817 Seven TM Receptor family member (str-204) [Caenorhabditis elegans] gb|AAC48232.1| Seven tm receptor protein 204 [Caenorhabditis elegans] 8.0E-74
blast NP_504817 Seven TM Receptor family member (str-204) [Caenorhabditis elegans] gb|AAC48232.1| Seven tm receptor protein 204 [Caenorhabditis elegans] 2.0E-73
blast AAB65383 Seven tm receptor protein 228 [Caenorhabditis elegans] ref|NP_503980.1| Seven TM Receptor family member (str-228) [Caenorhabditis elegans] 2.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.6E-32
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.7E-24
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.1E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502071.1 7 15-37,58-80,95-117,137-159,207-229,253-275,280-302
M7.13 7 15-37,58-80,95-117,137-159,207-229,253-275,280-302
SNAP00000010387 6 13-35,45-67,88-110,158-180,204-226,231-253
GENEFINDER00000010395 6 15-37,58-80,95-117,137-159,207-229,253-275
Sequence
Target Sequence 
>C. ELEGANS:177121_AT
tgggctcaatttttatggaaccgataataatgggaaacaattcatagtttacgagcaagt
tgttggaattgttgtcaatagttttattattgcaatttcagcaatttccgaaattgccga
ttgccgaaaattcacaaaaccggcaattgccgaaattgcgattgccggaaatataaattt
gagactttttacgtcctctctatctacggccgtgtactttggagtcaaaacctattacaa
aataaatgaactaactaataaagtatctctaagaacaagtaatcttcagtctcaattatt
gtattctcttgtcgttcaaactatgattcctgtaatcttaatgcacattccggttacaat
tatttacacatttgctttcatgggtcatggaatgggaactatatgtggaattgcatcaat
tactataagtatgtatcctgctctcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCTCAATTTTTATGGAACCGAT 326 553 573 Antisense
AATTTCCGAAATTGCCGATTGCCGA 692 173 675 Antisense
TGAGACTTTTTACGTCCTCTCTATC 209 569 752 Antisense
ATCTACGGCCGTGTACTTTGGAGTC 411 1 774 Antisense
GAACAAGTAATCTTCAGTCTCAATT 261 353 845 Antisense
AATTATTGTATTCTCTTGTCGTTCA 463 173 866 Antisense
TGTCGTTCAAACTATGATTCCTGTA 195 557 882 Antisense
TCCTGTAATCTTAATGCACATTCCG 225 593 900 Antisense
GCACATTCCGGTTACAATTATTTAC 676 315 915 Antisense
TACACATTTGCTTTCATGGGTCATG 155 643 937 Antisense
ATAAGTATGTATCCTGCTCTCGATC 504 25 997 Antisense
Sequence Source Affymetrix Proprietary Database