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[177119_at]

Description Y45G5AM.G /REP_DB=WormBase Gene ID /WP=CE26404 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23364.1
Cluster 6grp_total > 92      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 40.9
(-0.8)
A 		18
(-3)
A 		48.8
(-0.1)
A 		81.9
(3)
A 		64
B 45.7
(-0.2)
A 		67.3
(3)
A 		28.1
(-2.9)
A 		27.3
(-3)
A 		40
C 51.4
(2.9)
A 		24.3
(-3)
A 		35.4
(-0.6)
A 		51.9
(3)
A 		28
avr 46
(0.3) 		36.5
(-3) 		37.4
(-2.7) 		53.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 38.6
(-0.2)
A 		32.4
(-1)
M 		28.2
(-1.5)
A 		32
(-1)
A 		62.9
(3)
A 		17
(-3)
A 		46
B 34.6
(-1.1)
P 		28.8
(-2.9)
A 		47.7
(3)
A 		38.2
(0)
A 		28.8
(-2.9)
A 		28.6
(-3)
A 		19
C 24.2
(-1.2)
A 		43.6
(3)
A 		15.8
(-3)
A 		30.5
(0.2)
A 		30.6
(0.2)
A 		21.3
(-1.8)
A 		28
avr 32.5
(0.3) 		34.9
(1.1) 		30.6
(-0.3) 		33.6
(0.7) 		40.8
(3) 		22.3
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.9
(3)
A 		3.9
(-3)
A 		12.8
(1.9)
A 		12
(1.4)
A 		11
B 14.6
(1.9)
A 		16.6
(3)
A 		6.5
(-2.6)
A 		5.8
(-3)
A 		11
C 17
(3)
A 		7
(-3)
A 		12.3
(0.2)
A 		8.7
(-2)
A 		10
avr 15.5
(3) 		9.2
(-2.6) 		10.5
(-1.5) 		8.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.1
(-1.8)
A 		11.5
(-0)
M 		6.1
(-2.2)
A 		8.1
(-1.4)
A 		19
(3)
A 		4.2
(-3)
A 		15
B 12
(3)
P 		9.6
(-3)
A 		11.6
(2)
A 		10.1
(-1.8)
A 		11.7
(2.3)
A 		10.7
(-0.3)
A 		2
C 9
(0.2)
A 		13.3
(3)
A 		4
(-3)
A 		6.1
(-1.6)
A 		9.9
(0.8)
A 		7.1
(-1)
A 		9
avr 9.4
(-0.9) 		11.5
(1.1) 		7.2
(-3) 		8.1
(-2.1) 		13.5
(3) 		7.3
(-2.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19525
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.G NCBI
Target Description Y45G5AM.G /REP_DB=WormBase Gene ID /WP=CE26404 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23364.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024442 ENSEMBL cdna:SNAP chromosome:CEL140:V:4163036:4163425:1 9/11 None
GENEFINDER00000024454 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4163036:4163425:1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4162181-4163425(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86295 Hypothetical protein Y45G5AM.4 [Caenorhabditis elegans] 4.0E-72
blast NP_504157 Y45G5AM.5 [Caenorhabditis elegans] gb|AAG23363.2| Hypothetical protein Y45G5AM.5 [Caenorhabditis elegans] 8.0E-28
blast CAE58330 Hypothetical protein CBG01443 [Caenorhabditis briggsae] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177119_AT
tgcaagaccaatcaccgattcgctccgcccactttttaaccaatccgatggattaattgg
aaataaaatgaaatcgctcatcaaaactccggaatacctctattctcaagaattcgatgc
gcttttccattatctcttcaatcagtacaaacacggagtcttcggcagattcaacgatca
cacggattttcaagcgttctcccgaatgttccagaagctcacaaaaagcaggaatgatct
cgaagataagttctttcctgaacaatccgttgaaagagctgcggaccgattgaaagtgag
caaggaagatgtacagaagggatgcagagccagctatgacaagctgcacaagttggcaga
aaagggaagaagccgaccggtcagctggaaaactagattgttcggatgctttcgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAAGACCAATCACCGATTCGCTC 259 577 21 Antisense
GCCCACTTTTTAACCAATCCGATGG 35 287 47 Antisense
GAAATCGCTCATCAAAACTCCGGAA 440 361 90 Antisense
AACTCCGGAATACCTCTATTCTCAA 657 139 105 Antisense
GAATTCGATGCGCTTTTCCATTATC 159 325 130 Antisense
TTCCATTATCTCTTCAATCAGTACA 226 699 145 Antisense
CACGGAGTCTTCGGCAGATTCAACG 247 199 172 Antisense
CACACGGATTTTCAAGCGTTCTCCC 607 193 199 Antisense
TCTCCCGAATGTTCCAGAAGCTCAC 344 611 218 Antisense
AAGCCGACCGGTCAGCTGGAAAACT 139 147 390 Antisense
TAGATTGTTCGGATGCTTTCGCAGA 492 651 414 Antisense
Sequence Source Affymetrix Proprietary Database