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[177118_s_at]

Description R13.1 /REP_DB=WormBase Gene ID /WP=CE21122 /TR=Q21971 /GB=CAA97440.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 85      6grp_total > 37      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1848
1 2 3 4 range
A 926.6
(-2)
P 		707.9
(-2.7)
P 		619.7
(-3)
P 		2431
(3)
P 		1811
B 891.4
(-1.8)
P 		636.5
(-2.8)
P 		583.3
(-3)
P 		2131.7
(3)
P 		1548
C 991.2
(-1.4)
P 		642.5
(-3)
P 		680.3
(-2.8)
P 		1954.7
(3)
P 		1312
avr 936.4
(-1.8) 		662.3
(-2.9) 		627.8
(-3) 		2172.5
(3) 		1545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 916.2
(2.3)
P 		929.1
(2.5)
P 		507.6
(-3)
P 		618.6
(-1.6)
P 		561.8
(-2.3)
P 		968.1
(3)
P 		461
B 913.8
(3)
P 		770.5
(0.9)
P 		564.6
(-2.1)
P 		564.2
(-2.1)
P 		506.1
(-3)
P 		899.2
(2.8)
P 		408
C 883
(2.7)
P 		898.4
(3)
P 		650.4
(-1.6)
P 		577.5
(-3)
P 		658.2
(-1.5)
P 		856.5
(2.2)
P 		321
avr 904.3
(2.9) 		866
(2.2) 		574.2
(-3) 		586.8
(-2.8) 		575.4
(-3) 		907.9
(3) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 337.4
(2.5)
P 		153.7
(-3)
P 		162
(-2.8)
P 		355.9
(3)
P 		202
B 284.3
(-0.2)
P 		157.2
(-2.6)
P 		135.2
(-3)
P 		454.3
(3)
P 		319
C 328.1
(2.9)
P 		184.7
(-3)
P 		237.1
(-0.8)
P 		329.6
(3)
P 		145
avr 316.6
(1.2) 		165.2
(-3) 		178.1
(-2.6) 		379.9
(3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 168.9
(-1.4)
P 		330.4
(3)
P 		110.5
(-3)
P 		156.9
(-1.7)
P 		169.5
(-1.4)
P 		235.7
(0.4)
P 		220
B 318
(2.5)
P 		256.5
(0.6)
P 		137.1
(-3)
P 		149.4
(-2.6)
P 		205.6
(-0.9)
P 		335.3
(3)
P 		198
C 327.3
(3)
P 		274.1
(1.5)
P 		165.5
(-1.6)
P 		116.1
(-3)
P 		213
(-0.2)
P 		286.7
(1.8)
P 		211
avr 271.4
(2.4) 		287
(3) 		137.7
(-3) 		140.8
(-2.9) 		196
(-0.7) 		285.9
(3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177118_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10125
Sequence Type Exemplar sequence
Representative Public ID R13.1 NCBI
Target Description R13.1 /REP_DB=WormBase Gene ID /WP=CE21122 /TR=Q21971 /GB=CAA97440.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069604 NCBI Caenorhabditis elegans R13.1 (R13.1) mRNA, complete cds. 11/11 None
SNAP00000041972 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10822631:10824964:1 11/11 None
GENEFINDER00000041979 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10812400:10824964:1 11/11 None
R13.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10822631:10824964:1 gene:R13.1 11/11 None
R13.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10822631:10824964:1 gene:R13.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10822636-10824970(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13.1
Entrez Gene 177974 Entrez gene
SwissProt Q21971 EMBL-EBI
WormBase CE21122 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97440 Hypothetical protein R13.1 [Caenorhabditis elegans] ref|NP_502005.1| R13.1 [Caenorhabditis elegans] 0.0
blast CAE70843 Hypothetical protein CBG17627 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 1.8E-36
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 1.8E-36
Sequence
Target Sequence 
>C. ELEGANS:177118_S_AT
aatgttccatttagtccgatgccaatgccgggaagtgttcctccagattggacaagactt
cagagtccatccttctcaatgcagagtccgaacaaggtacagcttggtccagcgacaccc
gcaactccaggaatggtattccagaatccagcatctgccggatcaatgctcaacatgtcg
tctccacgacaaacaatgattccgggaatgcacccaatgatgccaccacatgatgttact
atgcgttcgggatctgctccatacacacccgaatcggtgaagaatgataagaatgatgaa
cttttgatgcacattgagggattgtatgtatgtgatgtaccgattctggagaatgagcaa
ctgacagtacggtatatggatggaacaaaggatttatgttttgaagattcaatggtttat
gaatttgcggaatctccgaagcatcaacaacaaatagacggaccaccgcaaactctaatg
gcaccaggaagcacagcatcctcaagtggttcaacatttacaccgccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTCCATTTAGTCCGATGCCAA 239 165 1351 Antisense
GATGCCAATGCCGGGAAGTGTTCCT 474 415 1368 Antisense
GTCCATCCTTCTCAATGCAGAGTCC 281 477 1415 Antisense
AAGGTACAGCTTGGTCCAGCGACAC 510 159 1444 Antisense
TCCAGAATCCAGCATCTGCCGGATC 39 589 1490 Antisense
GATCAATGCTCAACATGTCGTCTCC 595 421 1511 Antisense
GTTACTATGCGTTCGGGATCTGCTC 710 443 1585 Antisense
GCGGAATCTCCGAAGCATCAACAAC 197 293 1777 Antisense
GGACCACCGCAAACTCTAATGGCAC 304 523 1810 Antisense
GAAGCACAGCATCCTCAAGTGGTTC 292 341 1838 Antisense
GTGGTTCAACATTTACACCGCCATT 233 487 1856 Antisense
Sequence Source Affymetrix Proprietary Database