[Home] | [Total List]

[177117_at]

Description Y54E10A.4 /REP_DB=WormBase Gene ID /WP=CE24448 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60771.1
Cluster 6grp_total > 86      4grp_total > 33      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 118.9
(-3)
P 		170
(1.4)
M 		164.7
(1)
P 		188.2
(3)
P 		69
B 145.4
(-3)
A 		168.1
(-0.5)
A 		199.2
(3)
P 		193.2
(2.3)
M 		54
C 167.3
(-2.2)
A 		184.9
(3)
A 		170.9
(-1.1)
P 		164.5
(-3)
A 		20
avr 143.9
(-3) 		174.3
(1.8) 		178.3
(2.4) 		182
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 79.3
(-3)
A 		130
(-2.3)
P 		142.3
(-2.2)
P 		270.2
(-0.5)
P 		310.9
(-0)
P 		546.3
(3)
P 		467
B 113.5
(-3)
A 		141.8
(-2.3)
M 		196.7
(-1)
P 		190.5
(-1.1)
P 		223.8
(-0.3)
P 		360.7
(3)
P 		247
C 74.6
(-3)
A 		143.1
(-1.9)
M 		124.3
(-2.2)
P 		168.9
(-1.5)
P 		272.2
(0)
P 		463.7
(3)
P 		389
avr 89.1
(-3) 		138.3
(-2.2) 		154.4
(-1.9) 		209.9
(-1) 		269
(-0.1) 		456.9
(3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 43.3
(3)
P 		36.9
(0.6)
M 		43.1
(2.9)
P 		27.6
(-3)
P 		16
B 46.4
(3)
A 		41.5
(-2.7)
A 		46.2
(2.8)
P 		41.2
(-3)
M 		5
C 55.4
(2.2)
A 		53.2
(1.8)
A 		59.6
(3)
P 		27.7
(-3)
A 		32
avr 48.4
(2.6) 		43.9
(1) 		49.6
(3) 		32.2
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 14.6
(-3)
A 		46.2
(-1.4)
P 		31
(-2.2)
P 		68.5
(-0.3)
P 		93.8
(1)
P 		133
(3)
P 		118
B 39.5
(-3)
A 		47.2
(-2.5)
M 		47.8
(-2.5)
P 		50.4
(-2.3)
P 		90.9
(0.2)
P 		134.5
(3)
P 		95
C 27.6
(-3)
A 		43.7
(-2.2)
M 		31.6
(-2.8)
P 		34
(-2.7)
P 		88.1
(-0.2)
P 		155.2
(3)
P 		128
avr 27.2
(-3) 		45.7
(-2) 		36.8
(-2.5) 		51
(-1.7) 		90.9
(0.4) 		140.9
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.220
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.4 NCBI
Target Description Y54E10A.4 /REP_DB=WormBase Gene ID /WP=CE24448 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60771.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026620(9), NM_001026621(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026620 NCBI Caenorhabditis elegans Feminization Of Germline family member (fog-1) (fog-1) mRNA, complete cds. 9/11 None
NM_001026621 NCBI Caenorhabditis elegans Feminization Of Germline family member (fog-1) (fog-1) mRNA, complete cds. 9/11 None
SNAP00000033832 ENSEMBL cdna:SNAP chromosome:CEL140:I:3210103:3217022:1 9/11 None
GENEFINDER00000033839 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3211059:3217022:1 9/11 None
Y54E10A.4b ENSEMBL cdna:known chromosome:CEL140:I:3211047:3217366:1 gene:Y54E10A.4 9/11 None
Y54E10A.4a ENSEMBL cdna:known chromosome:CEL140:I:3212991:3217366:1 gene:Y54E10A.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3205079-3217522(+) 99.4 100.0
Public Domain and Genome References
Ensembl Y54E10A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68519 Feminization of germline protein 1, isoform b [Caenorhabditis elegans] emb|CAC16732.1| FOG-1 protein [Caenorhabditis elegans] emb|CAC16731.1| FOG-1 protein [Caenorhabditis elegans] ref|NP_001021792.1| Feminization Of Germline family member (fog-1) [Caenorhabditis elegans] 0.0
blast AAK68518 Feminization of germline protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021791.1| Feminization Of Germline family member (fog-1) [Caenorhabditis elegans] 0.0
blast AAT72439 FOG-1 [Caenorhabditis sp. CB5161] gb|AAT72433.1| FOG-1 [Caenorhabditis sp. CB5161] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.4E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.4E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.4E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.4E-8
Sequence
Target Sequence 
>C. ELEGANS:177117_AT
tgcaatttggcgtgcacctactcaaaccgggaaaacgagaaaaatgagactgaaatggga
gctcggaaattcttggaaatggtcaaatcgttcggattggagaaggaaaagactgtgact
gtgaacggaaacgaatatccaattggaccagatctatgggataaattccttcctgctccg
aaatatgatgtgggaactgaaccggtccgaatgaatccagaagccaaactccaacagttc
ctacgcatgaaacgtaccaacgtctacagcaacaagagcgcatactgcaaagaggctccg
tgtcgccagtactactgtccatcgtgctccaacaaactccattcgggacccaatcagcac
accctcttaccagccggaaaaccagaacgtcgtccgagaaaggacaaaaatatgtacctt
gttaatatgggaaaaatttttttgtaccgcgtaacacaaatgagatatgaaacttttaaa
aaacaacaattatttatcttcactcgacgaaaaaagaagattctcaagccattctccata
cttttcccagagagcatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATTTGGCGTGCACCTACTCAA 255 577 2104 Antisense
ATTCCTTCCTGCTCCGAAATATGAT 156 9 2268 Antisense
GATGTGGGAACTGAACCGGTCCGAA 671 405 2290 Antisense
TGAATCCAGAAGCCAAACTCCAACA 664 575 2315 Antisense
CTCCAACAGTTCCTACGCATGAAAC 92 235 2332 Antisense
AACGTACCAACGTCTACAGCAACAA 435 143 2354 Antisense
ACTGCAAAGAGGCTCCGTGTCGCCA 439 95 2387 Antisense
ACTCCATTCGGGACCCAATCAGCAC 345 99 2439 Antisense
TACCAGCCGGAAAACCAGAACGTCG 489 639 2471 Antisense
AGAAGATTCTCAAGCCATTCTCCAT 281 75 2618 Antisense
TCCATACTTTTCCCAGAGAGCATCC 589 589 2638 Antisense
Sequence Source Affymetrix Proprietary Database