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[177114_at]

Description Y38C1AA.H /REP_DB=WormBase Gene ID /WP=CE25249 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59469.1
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_high_8_8 > 42      6grp_highest_nonorm > 74      6grp_total > 02      4grp_total > 45      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 775
1 2 3 4 range
A 958.1
(3)
P 		645.8
(0.6)
P 		459.8
(-0.9)
P 		183.2
(-3)
A 		775
B 930.1
(3)
P 		580.4
(-0.5)
P 		322.1
(-3)
P 		338.5
(-2.8)
P 		608
C 859.5
(3)
P 		611.2
(0.6)
P 		477.5
(-0.7)
P 		232.2
(-3)
P 		627
avr 915.9
(3) 		612.5
(0.3) 		419.8
(-1.5) 		251.3
(-3) 		665

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 804.3
(3)
P 		788.1
(2.5)
P 		706.7
(0.2)
P 		652
(-1.4)
P 		683.7
(-0.5)
P 		597.4
(-3)
P 		207
B 883.4
(2.6)
P 		905.5
(3)
P 		587.2
(-2.9)
P 		658.4
(-1.6)
P 		776
(0.6)
P 		583.3
(-3)
P 		322
C 695.7
(-0.8)
P 		789.8
(3)
P 		674.7
(-1.7)
P 		642
(-3)
P 		699
(-0.7)
P 		660.6
(-2.2)
P 		148
avr 794.5
(2.1) 		827.8
(3) 		656.2
(-1.8) 		650.8
(-2) 		719.6
(-0) 		613.8
(-3) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 348.9
(3)
P 		140.2
(-0.9)
P 		120.2
(-1.3)
P 		26.8
(-3)
A 		322
B 296.6
(3)
P 		143.3
(-1.1)
P 		74.6
(-2.9)
P 		72.1
(-3)
P 		225
C 284.5
(3)
P 		175.7
(0.3)
P 		166.4
(0.1)
P 		39.2
(-3)
P 		245
avr 310
(3) 		153.1
(-0.6) 		120.4
(-1.3) 		46
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 148.3
(-2.9)
P 		280.3
(3)
P 		153.9
(-2.6)
P 		165.4
(-2.1)
P 		206.3
(-0.3)
P 		145.5
(-3)
P 		135
B 307.4
(2.7)
P 		301.4
(2.5)
P 		142.6
(-3)
P 		174.4
(-1.9)
P 		315.3
(3)
P 		217.5
(-0.4)
P 		173
C 257.9
(3)
P 		241
(2.2)
P 		171.7
(-1)
P 		129.1
(-3)
P 		226.2
(1.5)
P 		221.1
(1.3)
P 		129
avr 237.9
(1.2) 		274.2
(3) 		156.1
(-3) 		156.3
(-3) 		249.3
(1.7) 		194.7
(-1) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19386
Sequence Type Exemplar sequence
Representative Public ID Y38C1AA.H NCBI
Target Description Y38C1AA.H /REP_DB=WormBase Gene ID /WP=CE25249 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59469.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067475 NCBI Caenorhabditis elegans Y38C1AA.3 (Y38C1AA.3) mRNA, complete cds. 11/11 None
SNAP00000038646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:189486:192079:1 11/11 None
GENEFINDER00000038658 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:189486:192079:1 11/11 None
Y38C1AA.3 ENSEMBL cdna:known chromosome:CEL140:IV:184650:192079:1 gene:Y38C1AA.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:190584-192079(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38C1AA.3
Entrez Gene 176833 Entrez gene
SwissProt Q9N426 EMBL-EBI
WormBase CE27609 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59469 Hypothetical protein Y38C1AA.3 [Caenorhabditis elegans] ref|NP_499876.1| Y38C1AA.3 [Caenorhabditis elegans] 0.0
blast AAF59469 Hypothetical protein Y38C1AA.3 [Caenorhabditis elegans] ref|NP_499876.1| Y38C1AA.3 [Caenorhabditis elegans] 1.0E-171
blast CAE58510 Hypothetical protein CBG01661 [Caenorhabditis briggsae] 1.0E-146
blast CAE58510 Hypothetical protein CBG01661 [Caenorhabditis briggsae] 1.0E-141
blast CAE18030 Hypothetical protein Y57G11C.47 [Caenorhabditis elegans] ref|NP_001023531.1| Y57G11C.47 [Caenorhabditis elegans] 1.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000868 EMBL-EBI Isochorismatase hydrolase 9.5E-16
Pfam IPR000868 EMBL-EBI Isochorismatase hydrolase 9.5E-16
Sequence
Target Sequence 
>C. ELEGANS:177114_AT
ttacaccactcaacgagctgcttcagctgtcgtcctgggatttggtggtctatacgaagg
actggcatccacacaatcacatttcatttttgagtcaggcacataattcggatagggtta
tggatgagaaggatgagaataaaactttgggattctttgattctaagagctggggatcgg
atattcatccggaaatctacattgcggacaacgcagagtatattatgaagggagtcgacc
catatctggattcctacagcgctttcaacgataataacgggcggtccaagacagagcttg
aagatttgctgcgtcgcgagaatattgacgcagttgtgatcgccggactcgcctacgata
tttgcgttcggtttacttgcctggacgctgtgaagcagaacttccttgccgccgtgatcc
cggaatgcagcgctggactaacgaagaagggaatcgaggagtctgagatggctttcaaaa
agcaaggcgttgcgatgatctcaaaagacgaggcacgtggaatcacggaaggcggttttc
tgccgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACACCACTCAACGAGCTGCTTCA 205 683 236 Antisense
TCAGCTGTCGTCCTGGGATTTGGTG 379 623 258 Antisense
AGGACTGGCATCCACACAATCACAT 317 53 293 Antisense
GTCGACCCATATCTGGATTCCTACA 613 473 469 Antisense
ATTCCTACAGCGCTTTCAACGATAA 151 3 485 Antisense
GCTTGAAGATTTGCTGCGTCGCGAG 306 307 531 Antisense
TATTGACGCAGTTGTGATCGCCGGA 261 665 558 Antisense
GGACTCGCCTACGATATTTGCGTTC 251 525 580 Antisense
GCGTTCGGTTTACTTGCCTGGACGC 664 289 599 Antisense
TGTGAAGCAGAACTTCCTTGCCGCC 242 557 624 Antisense
CACGGAAGGCGGTTTTCTGCCGAGA 707 197 759 Antisense
Sequence Source Affymetrix Proprietary Database