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[177113_at]

Description DY3.5 /REP_DB=WormBase Gene ID /WP=CE15749 /TR=O45322 /GB=CAB09414.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 72      6grp_total > 0      4grp_total > 57      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 881
1 2 3 4 range
A 43.4
(-3)
A 		694.7
(1.6)
P 		891.8
(3)
P 		115.8
(-2.5)
A 		848
B 52.3
(-2.9)
A 		856.1
(2.6)
P 		916.8
(3)
P 		36.3
(-3)
A 		881
C 48.7
(-3)
A 		775.9
(2.1)
P 		907.5
(3)
P 		91.8
(-2.7)
P 		859
avr 48.1
(-3) 		775.6
(2.1) 		905.4
(3) 		81.3
(-2.8) 		857

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 715
1 2 3 4 5 6 range
A 177.1
(-3)
P 		859.1
(3)
P 		297.8
(-1.9)
P 		489.3
(-0.3)
P 		517.6
(-0)
P 		396.9
(-1.1)
P 		682
B 170.3
(-3)
P 		706.1
(3)
P 		254.8
(-2.1)
P 		459.9
(0.2)
P 		438.2
(0)
P 		358
(-0.9)
P 		536
C 144.3
(-3)
P 		662.1
(3)
P 		393.3
(-0.1)
P 		384.9
(-0.2)
P 		525
(1.4)
P 		318.1
(-1)
P 		518
avr 163.9
(-3) 		742.4
(3) 		315.3
(-1.4) 		444.7
(-0.1) 		493.6
(0.4) 		357.7
(-1) 		579
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 15.8
(-3)
A 		150.8
(0.7)
P 		233.1
(3)
P 		16.9
(-3)
A 		217
B 16.7
(-2.7)
A 		211.4
(3)
P 		212.4
(3)
P 		7.7
(-3)
A 		205
C 16.1
(-3)
A 		223.1
(1.1)
P 		316.3
(3)
P 		15.5
(-3)
P 		301
avr 16.2
(-2.9) 		195.1
(1.5) 		253.9
(3) 		13.4
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 32.7
(-3)
P 		305.5
(3)
P 		64.8
(-2.3)
P 		124.1
(-1)
P 		156.2
(-0.3)
P 		96.6
(-1.6)
P 		273
B 59.3
(-3)
P 		235
(3)
P 		61.9
(-2.9)
P 		121.8
(-0.9)
P 		178
(1.1)
P 		133.5
(-0.5)
P 		176
C 53.5
(-3)
P 		202
(3)
P 		100.1
(-1.1)
P 		77.4
(-2)
P 		169.9
(1.7)
P 		106.5
(-0.9)
P 		149
avr 48.5
(-3) 		247.5
(3) 		75.6
(-2.2) 		107.8
(-1.2) 		168
(0.6) 		112.2
(-1.1) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1113
Sequence Type Exemplar sequence
Representative Public ID DY3.5 NCBI
Target Description DY3.5 /REP_DB=WormBase Gene ID /WP=CE15749 /TR=O45322 /GB=CAB09414.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059974 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-26) (pqn-26) mRNA, complete cds. 11/11 None
SNAP00000022837 ENSEMBL cdna:SNAP chromosome:CEL140:I:8779559:8782649:-1 11/11 None
GENEFINDER00000022849 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8779559:8785636:-1 11/11 None
DY3.5 ENSEMBL cdna:known chromosome:CEL140:I:8779559:8785922:-1 gene:DY3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8779489-8785853(-) 91.43 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-26
Ensembl DY3.5
Entrez Gene 183974 Entrez gene
SwissProt O45322 EMBL-EBI
WormBase CE15749 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09414 Hypothetical protein DY3.5 [Caenorhabditis elegans] ref|NP_492375.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-26) [Caenorhabditis elegans] 1.0E-129
blast CAB09414 Hypothetical protein DY3.5 [Caenorhabditis elegans] ref|NP_492375.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-26) [Caenorhabditis elegans] 1.0E-93
blast CAB09414 Hypothetical protein DY3.5 [Caenorhabditis elegans] ref|NP_492375.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-26) [Caenorhabditis elegans] 2.0E-93
blast CAE66971 Hypothetical protein CBG12366 [Caenorhabditis briggsae] 2.0E-53
blast CAE66971 Hypothetical protein CBG12366 [Caenorhabditis briggsae] 4.0E-53
blast CAE66971 Hypothetical protein CBG12366 [Caenorhabditis briggsae] 5.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492375.1 1 52-69
DY3.5 1 52-69
Sequence
Target Sequence 
>C. ELEGANS:177113_AT
tgttccaccaatgtctgttgctacagtaacacgtggtccaccaccaccaactcgtccagc
ttcagtaattgctccaagctcatcggttgtaccaaagtctcaaccgagaccatcaccaac
tactcggccaccaactcgtgctacaattcgtccaacacctcaaaacaaggcagttaccag
tcgtcctgcacctgccacgtcatcagtggtcactccatctccaagtcaatctttaactca
gcagattcggaaattgccagcagttttgtacattgactctaagaacgagagcacaaagaa
aactgaaacattattgagagatacatatggattaccattagtcacattctacgtggataa
gacagacaaaccagctgcaattcaacgtcaacttcaacaattaactgctcacaagggact
tccgtatctttttatctgcggaactttcattggaagtgaatctcacattgaaaattatca
tacgaatggccaaatccctcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCCACCAATGTCTGTTGCTACA 423 563 1833 Antisense
TGCTACAGTAACACGTGGTCCACCA 579 557 1851 Antisense
GTCCAGCTTCAGTAATTGCTCCAAG 213 477 1886 Antisense
CTCCAAGCTCATCGGTTGTACCAAA 596 227 1904 Antisense
ACCAACTCGTGCTACAATTCGTCCA 64 85 1962 Antisense
AACAAGGCAGTTACCAGTCGTCCTG 381 133 1996 Antisense
CTGCCACGTCATCAGTGGTCACTCC 641 235 2024 Antisense
AAACCAGCTGCAATTCAACGTCAAC 353 125 2200 Antisense
ATTAACTGCTCACAAGGGACTTCCG 403 1 2232 Antisense
GGACTTCCGTATCTTTTTATCTGCG 231 525 2248 Antisense
ATACGAATGGCCAAATCCCTCAACT 590 21 2312 Antisense
Sequence Source Affymetrix Proprietary Database