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[177112_at]

Description Y38C1AA.F /REP_DB=WormBase Gene ID /WP=CE25247 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59467.1
Cluster 6grp_total > 05      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 106.5
(-2.7)
A 		144.4
(0.5)
A 		173.9
(3)
A 		102.8
(-3)
A 		71
B 115.3
(3)
A 		71.1
(-0)
A 		83.1
(0.8)
A 		27.1
(-3)
A 		88
C 113
(3)
A 		110.4
(2.6)
A 		110.7
(2.6)
A 		74.3
(-3)
A 		39
avr 111.6
(1.8) 		108.6
(1.5) 		122.6
(3) 		68.1
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 184.6
(3)
A 		131.8
(0.6)
A 		82.3
(-1.7)
A 		90.3
(-1.4)
A 		73.4
(-2.1)
A 		54.7
(-3)
A 		130
B 94.9
(1.8)
A 		110
(3)
A 		69.9
(-0.1)
A 		32.3
(-3)
A 		85.7
(1.1)
A 		89.1
(1.4)
A 		78
C 158.6
(3)
A 		120.9
(1.4)
A 		118.6
(1.3)
A 		86.7
(-0)
A 		97.3
(0.4)
A 		17.1
(-3)
A 		142
avr 146
(3) 		120.9
(1.4) 		90.3
(-0.6) 		69.8
(-1.9) 		85.5
(-0.9) 		53.6
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 38.8
(1.7)
A 		31.3
(0.2)
A 		45.5
(3)
A 		15
(-3)
A 		31
B 36.8
(3)
A 		17.6
(-0.7)
A 		19.3
(-0.4)
A 		5.8
(-3)
A 		31
C 37.4
(2.7)
A 		31.7
(1.4)
A 		38.6
(3)
A 		12.5
(-3)
A 		26
avr 37.7
(3) 		26.9
(0.6) 		34.5
(2.3) 		11.1
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 34
(0.7)
A 		46.9
(3)
A 		17.9
(-2.2)
A 		22.9
(-1.3)
A 		22.2
(-1.4)
A 		13.3
(-3)
A 		34
B 33
(2.2)
A 		36.6
(3)
A 		17
(-1.2)
A 		8.6
(-3)
A 		34.8
(2.6)
A 		33.2
(2.3)
A 		28
C 58.8
(3)
A 		36.9
(0.5)
A 		30.2
(-0.2)
A 		17.4
(-1.7)
A 		31.5
(-0.1)
A 		5.7
(-3)
A 		53
avr 41.9
(3) 		40.1
(2.6) 		21.7
(-1.7) 		16.3
(-3) 		29.5
(0.1) 		17.4
(-2.7) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19345
Sequence Type Exemplar sequence
Representative Public ID Y38C1AA.F NCBI
Target Description Y38C1AA.F /REP_DB=WormBase Gene ID /WP=CE25247 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59467.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028278, NM_001028279
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38C1AA.5a ENSEMBL cdna:known chromosome:CEL140:IV:165125:169864:1 gene:Y38C1AA.5 None
Y38C1AA.5b ENSEMBL cdna:known chromosome:CEL140:IV:165125:169950:1 gene:Y38C1AA.5 None
SNAP00000038643 ENSEMBL cdna:SNAP chromosome:CEL140:IV:166520:169864:1 None
NM_001028279 NCBI Caenorhabditis elegans Y38C1AA.5b (Y38C1AA.5) mRNA, complete cds. None
NM_001028278 NCBI Caenorhabditis elegans Y38C1AA.5a (Y38C1AA.5) mRNA, complete cds. None
GENEFINDER00000038662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:165842:169864:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:164972-171212(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y38C1AA.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59467 Hypothetical protein Y38C1AA.5a [Caenorhabditis elegans] ref|NP_001023449.1| Y38C1AA.5a [Caenorhabditis elegans] 0.0
blast AAU05550 Hypothetical protein Y38C1AA.5b [Caenorhabditis elegans] ref|NP_001023450.1| Y38C1AA.5b [Caenorhabditis elegans] 0.0
blast CAE58508 Hypothetical protein CBG01658 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.4E-6
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.2E-13
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 4.0E-4
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.2E-13
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.2E-13
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.4E-6
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023450.1 1 570-592
NP_001023449.1 1 568-590
Y38C1AA.5a 1 568-590
Y38C1AA.5b 1 570-592
SNAP00000038643 1 474-496
GENEFINDER00000038662 1 536-558
Sequence
Target Sequence 
>C. ELEGANS:177112_AT
agaggggaaggtccatttgcaccgccggtaacgactcctattaaaatcggtgataatata
tcgttggtcgtcaaagcgaagagctatttgaatgaaaccgaccaattcgatatgtttgtg
cactcttgttttgcgaccgacggcaaaggggacacaaaagtgcaaatgatcgatgagaat
ggatgcgtcattcgtcttgaattcgcctcgcctttgcaccgagccaaggactcggagaac
acaatgttctactacctcctgataaaagcattcaaattccccggacccgatgatgtgtac
ttctcgtgtacaatcgagttcactccgaaaaccaaggcaccgaatatttgttcaaagttg
aggagacgaagagagattctggaggagggaatgacggagatgaggcttttcgacagtgtt
aatgtggagttggagaatagagattctaatgtgaaaactggggtaactggccggctggcc
tccggtgaaggttcttggtgtgagggtgagcgcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGGGAAGGTCCATTTGCACCGC 148 69 1228 Antisense
GTTTGTGCACTCTTGTTTTGCGACC 491 451 1341 Antisense
GCGACCGACGGCAAAGGGGACACAA 587 287 1360 Antisense
TGCGTCATTCGTCTTGAATTCGCCT 650 583 1411 Antisense
ATGTTCTACTACCTCCTGATAAAAG 618 45 1471 Antisense
CAAATTCCCCGGACCCGATGATGTG 394 193 1500 Antisense
TCGTGTACAATCGAGTTCACTCCGA 707 603 1531 Antisense
TTCACTCCGAAAACCAAGGCACCGA 96 665 1546 Antisense
GAAAACTGGGGTAACTGGCCGGCTG 298 353 1680 Antisense
GCCTCCGGTGAAGGTTCTTGGTGTG 656 281 1705 Antisense
TTCTTGGTGTGAGGGTGAGCGCGCG 123 689 1719 Antisense
Sequence Source Affymetrix Proprietary Database