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[177109_at]

Description Y71H2AL.D /REP_DB=WormBase Gene ID /WP=CE25580 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60873.1
Cluster 6grp_total > 46      4grp_total > 38      6grp_cgc > 55      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 32.1
(3)
A 		9.8
(-2.4)
A 		7.3
(-3)
A 		22.6
(0.7)
A 		25
B 42.4
(3)
A 		19.8
(-1.8)
A 		13.9
(-3)
A 		14.9
(-2.8)
A 		29
C 56.2
(3)
A 		14.8
(-1.8)
A 		4.6
(-3)
A 		7.7
(-2.6)
A 		52
avr 43.6
(3) 		14.8
(-1.9) 		8.6
(-3) 		15.1
(-1.9) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.1
(-2.9)
A 		44
(3)
A 		4.2
(-2.9)
A 		3.3
(-3)
A 		3.2
(-3)
A 		41.3
(2.6)
A 		41
B 5.8
(-1.7)
A 		16.2
(3)
A 		11.9
(1)
A 		10.4
(0.4)
A 		3
(-3)
A 		9.5
(-0)
A 		13
C 14.8
(3)
A 		10
(-0)
A 		12.3
(1.4)
A 		10
(-0)
A 		13.5
(2.2)
A 		5.2
(-3)
A 		10
avr 8.2
(-2.4) 		23.4
(3) 		9.5
(-2) 		7.9
(-2.5) 		6.6
(-3) 		18.7
(1.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.7
(3)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		3.3
(-2.1)
A 		10
B 13.5
(3)
A 		4.9
(-2)
A 		3.2
(-3)
A 		3.2
(-3)
A 		10
C 18.6
(3)
A 		4.3
(-2)
A 		1.6
(-2.9)
A 		1.3
(-3)
A 		17
avr 14.6
(3) 		3.8
(-2.2) 		2.2
(-3) 		2.6
(-2.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.8
(-3)
A 		15.6
(3)
A 		0.9
(-3)
A 		0.8
(-3)
A 		1
(-2.9)
A 		10.1
(0.8)
A 		15
B 2
(-1.9)
A 		5.4
(3)
A 		2.9
(-0.6)
A 		2.7
(-0.9)
A 		1.2
(-3)
A 		3.5
(0.3)
A 		4
C 5.5
(3)
A 		3.1
(-0.8)
A 		3.1
(-0.8)
A 		2
(-2.5)
A 		4.4
(1.3)
A 		1.7
(-3)
A 		4
avr 2.8
(-2) 		8
(3) 		2.3
(-2.5) 		1.8
(-3) 		2.2
(-2.6) 		5.1
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18945
Sequence Type Exemplar sequence
Representative Public ID Y71H2AL.D NCBI
Target Description Y71H2AL.D /REP_DB=WormBase Gene ID /WP=CE25580 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60873.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71H2AL.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71H2AL.D Y71H2AL.D /REP_DB=WormBase Gene ID /WP=CE25580 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60873.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027469 11/11 Negative Strand Matching Probes None
NM_001027470 11/11 Negative Strand Matching Probes None
SNAP00000036787 11/11 Negative Strand Matching Probes None
GENEFINDER00000036792 11/11 Negative Strand Matching Probes None
H19M22.2b.2 11/11 Negative Strand Matching Probes None
H19M22.2a 11/11 Negative Strand Matching Probes A 
H19M22.2b.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2673809-2674247(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177109_AT
gttcaatgtcgtcggtgttctgttcagaagtcgaagaatgtgtcgttgtcctggagccag
agtactgtaggttccccacagaatgtgtccgtagccagagttggttccagcttgcacagt
gatgttgtagatggtttccgggcggagtccctcgaatttgatcgagtttccaggatatgg
gacggtgtagttcttggatggtccagtctttccggttgtcgggtcgaatggagcaattgt
gacgcgatggtgagtgatgagttctcgctgttcggggtcgaagatctctggtggcaccca
atctacatggagcatagtgtcactcttctcgatgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATGTCGTCGGTGTTCTGTTC 392 443 46 Antisense
GAAGAATGTGTCGTTGTCCTGGAGC 78 341 78 Antisense
GAGCCAGAGTACTGTAGGTTCCCCA 352 383 99 Antisense
AGGTTCCCCACAGAATGTGTCCGTA 9 13 114 Antisense
AGCCAGAGTTGGTTCCAGCTTGCAC 532 83 138 Antisense
TAGATGGTTTCCGGGCGGAGTCCCT 666 651 173 Antisense
GTTCTTGGATGGTCCAGTCTTTCCG 153 445 235 Antisense
GTCTTTCCGGTTGTCGGGTCGAATG 303 289 251 Antisense
GTGAGTGATGAGTTCTCGCTGTTCG 1 485 295 Antisense
AGATCTCTGGTGGCACCCAATCTAC 505 65 327 Antisense
GCATAGTGTCACTCTTCTCGATGAG 110 309 357 Antisense
Sequence Source Affymetrix Proprietary Database