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[177107_s_at]

Description Y47G6A.22 /REP_DB=WormBase Gene ID /WP=CE24368 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60668.1
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 56      6grp_total > 64      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1191
1 2 3 4 range
A 1282.7
(1.3)
P 		1257.5
(1.1)
P 		1517.9
(3)
P 		675.8
(-3)
P 		842
B 1486.3
(0.7)
P 		1553.8
(1.1)
P 		1867.1
(3)
P 		887.8
(-3)
P 		979
C 1314.7
(0.1)
P 		1579.4
(2)
P 		1708.4
(3)
P 		900
(-3)
P 		808
avr 1361.2
(0.7) 		1463.6
(1.4) 		1697.8
(3) 		821.2
(-3) 		877

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2147
1 2 3 4 5 6 range
A 1753.1
(-2.9)
P 		1890.3
(-2.3)
P 		3116.8
(3)
P 		2188.8
(-1)
P 		1738.7
(-3)
P 		2059.3
(-1.6)
P 		1378
B 1621.8
(-3)
P 		1820.8
(-2.4)
P 		3607.6
(3)
P 		2245.4
(-1.1)
P 		1755.4
(-2.6)
P 		2168.4
(-1.3)
P 		1986
C 1460.3
(-3)
P 		1703.5
(-1.9)
P 		2510.5
(1.7)
P 		2179.6
(0.2)
P 		1698.4
(-1.9)
P 		2811.3
(3)
P 		1351
avr 1611.7
(-3) 		1804.9
(-2.2) 		3078.3
(3) 		2204.6
(-0.6) 		1730.8
(-2.5) 		2346.3
(0) 		1467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 497
1 2 3 4 range
A 467
(3)
P 		273
(-0.2)
P 		396.8
(1.9)
P 		98.9
(-3)
P 		368
B 474
(3)
P 		383.8
(1.1)
P 		432.6
(2.1)
P 		189.2
(-3)
P 		285
C 435.2
(0.8)
P 		454.1
(1.1)
P 		595.4
(3)
P 		151.8
(-3)
P 		444
avr 458.7
(2.7) 		370.3
(1.1) 		474.9
(3) 		146.6
(-3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 618
1 2 3 4 5 6 range
A 323.2
(-3)
P 		672.3
(2.9)
P 		678.8
(3)
P 		555.1
(0.9)
P 		524.7
(0.4)
P 		501.4
(0)
P 		356
B 564.3
(-3)
P 		606.1
(-2.2)
P 		876
(3)
P 		594.7
(-2.4)
P 		713.2
(-0.1)
P 		808.6
(1.7)
P 		312
C 541.3
(-1.8)
P 		519.8
(-2)
P 		639
(-0.6)
P 		438.3
(-3)
P 		549.6
(-1.7)
P 		941.1
(3)
P 		503
avr 476.3
(-3) 		599.4
(-0.3) 		731.3
(2.6) 		529.4
(-1.8) 		595.8
(-0.4) 		750.4
(3) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177107_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.85
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.22 NCBI
Target Description Y47G6A.22 /REP_DB=WormBase Gene ID /WP=CE24368 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60668.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026594 NCBI Caenorhabditis elegans Y47G6A.22 (Y47G6A.22) mRNA, complete cds. 11/11 None
SNAP00000033992 ENSEMBL cdna:SNAP chromosome:CEL140:I:3559996:3562846:-1 11/11 None
Y47G6A.22 ENSEMBL cdna:known chromosome:CEL140:I:3559931:3562853:-1 gene:Y47G6A.22 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034073 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3559995-3562846(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.22
Entrez Gene 171925 Entrez gene
SwissProt Q8MXS8 EMBL-EBI
WormBase CE24368 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18567_AT short-chain dehydrogenase/reductase (SDR) family protein at
ATH1-121501:266761_AT short-chain dehydrogenase/reductase (SDR) family protein at
DROSOPHILA_2:1633503_AT dm
DROSGENOME1:149345_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_001021765 Y47G6A.22 [Caenorhabditis elegans] gb|AAM43788.1| Hypothetical protein Y47G6A.22 [Caenorhabditis elegans] 1.0E-135
blast CAE68953 Hypothetical protein CBG14933 [Caenorhabditis briggsae] 1.0E-128
blast CAE68954 Hypothetical protein CBG14934 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.9E-66
Sequence
Target Sequence 
>C. ELEGANS:177107_S_AT
agaatgatgtactggtgaccgctgttgagttggcttcagaagaagctccgaagactattg
tggatgcgactgtgcaaaagtttggacgaattgacacattgatcaattcggccgggattc
tgcgtgccggaccagttctcgattctggaattgaagtctacgatgagctaatgaatgtga
atgttcgtagtttgatccgcctgacacgtgcagctcttccacatattattacaacaaaag
gaactgttgtcaatgtcagcagtattaatggaccgtgccctttcccaaatgtaacctatt
actgtatgtccaagtcggccgtagatcaattcacaaaatgtttggctctcgaaatggctc
cgaatggagttcgtgttaatgctgtttgcccaggggtcaccgtgaccaacctgcatcgta
catctggtcaagacgagacaacatattctgcgttcttggaacgtagtaaaacgacacacg
cactcggccgtcccggtgatgccaatgaagttgctgaggcaatctatttcctcgcctctg
agaaaagttcattcactactggagaacttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGATGTACTGGTGACCGCTGT 478 75 167 Antisense
TGACCGCTGTTGAGTTGGCTTCAGA 81 571 182 Antisense
AGACTATTGTGGATGCGACTGTGCA 415 71 218 Antisense
CAGGGGTCACCGTGACCAACCTGCA 97 55 557 Antisense
CCAACCTGCATCGTACATCTGGTCA 247 277 572 Antisense
GAGACAACATATTCTGCGTTCTTGG 258 393 601 Antisense
TAGTAAAACGACACACGCACTCGGC 573 651 630 Antisense
CCGTCCCGGTGATGCCAATGAAGTT 511 263 654 Antisense
GCTGAGGCAATCTATTTCCTCGCCT 437 295 679 Antisense
ATTTCCTCGCCTCTGAGAAAAGTTC 605 13 692 Antisense
TTCATTCACTACTGGAGAACTTCTT 575 685 714 Antisense
Sequence Source Affymetrix Proprietary Database