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[177106_at]

Description Y61A9LA.F /REP_DB=WormBase Gene ID /WP=CE22680 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60838.1
Cluster 6grp_total > 82      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 11.9
(-3)
A 		135
(0.6)
P 		215.3
(3)
P 		16.6
(-2.9)
A 		203
B 13.4
(-2.7)
A 		198.9
(2.1)
P 		235.8
(3)
P 		2.7
(-3)
A 		233
C 16.3
(-3)
A 		199.2
(3)
P 		193.9
(2.8)
P 		50.6
(-1.9)
A 		183
avr 13.9
(-3) 		177.7
(1.9) 		215
(3) 		23.3
(-2.7) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 12
(-3)
A 		101.7
(0.2)
M 		136.1
(1.4)
P 		182.3
(3)
P 		138.1
(1.4)
P 		106.5
(0.3)
P 		170
B 13.1
(-3)
A 		167.7
(2.2)
P 		110
(0.2)
P 		169.8
(2.3)
P 		192.1
(3)
P 		109.8
(0.2)
P 		179
C 46.7
(-3)
A 		158.9
(0.8)
P 		92.1
(-1.5)
A 		222.6
(3)
M 		197.2
(2.1)
P 		116
(-0.6)
P 		176
avr 23.9
(-3) 		142.8
(1.3) 		112.7
(0.2) 		191.6
(3) 		175.8
(2.4) 		110.8
(0.1) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 4.3
(-2.8)
A 		29.3
(-0)
P 		56.3
(3)
P 		2.4
(-3)
A 		54
B 4.3
(-2.6)
A 		49.1
(2.4)
P 		54.6
(3)
P 		0.6
(-3)
A 		54
C 5.4
(-3)
A 		57.3
(2)
P 		67.6
(3)
P 		8.5
(-2.7)
A 		62
avr 4.7
(-2.9) 		45.2
(1.5) 		59.5
(3) 		3.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 2.2
(-3)
A 		36.2
(1.6)
M 		29.6
(0.7)
P 		46.2
(3)
P 		41.7
(2.4)
P 		25.9
(0.2)
P 		44
B 4.6
(-3)
A 		55.8
(1.2)
P 		26.7
(-1.2)
P 		45
(0.3)
P 		78
(3)
P 		41
(-0)
P 		73
C 17.3
(-3)
A 		48.5
(1)
P 		23.4
(-2.2)
A 		44.8
(0.5)
M 		63.8
(3)
P 		38.8
(-0.2)
P 		47
avr 8
(-3) 		46.8
(1.4) 		26.6
(-0.9) 		45.3
(1.2) 		61.2
(3) 		35.2
(0.1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19499
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.F NCBI
Target Description Y61A9LA.F /REP_DB=WormBase Gene ID /WP=CE22680 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60838.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071836 NCBI Caenorhabditis elegans Y61A9LA.7 (Y61A9LA.7) mRNA, complete cds. 11/11 None
SNAP00000010095 ENSEMBL cdna:SNAP chromosome:CEL140:V:4558138:4561603:-1 9/11 None
Y61A9LA.7 ENSEMBL cdna:known chromosome:CEL140:V:4558138:4559385:-1 gene:Y61A9LA.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4558137-4559385(-) 95.5 100.0
Public Domain and Genome References
Gene Title
Ensembl Y61A9LA.7
Entrez Gene 190446 Entrez gene
SwissProt Q9N316 EMBL-EBI
WormBase CE22680 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60838 Hypothetical protein Y61A9LA.7 [Caenorhabditis elegans] ref|NP_504237.1| Y61A9LA.7 [Caenorhabditis elegans] 6.0E-56
blast AAF60838 Hypothetical protein Y61A9LA.7 [Caenorhabditis elegans] ref|NP_504237.1| Y61A9LA.7 [Caenorhabditis elegans] 2.0E-48
blast CAE56770 Hypothetical protein CBG24574 [Caenorhabditis briggsae] 3.0E-46
blast CAE56770 Hypothetical protein CBG24574 [Caenorhabditis briggsae] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:177106_AT
cgttgaccacgtttctgacagatgctcaacagcaaactctgcaccagcttatcgtgtcgg
ctcgtgactctggagcaaatgaagaaatggtgaaggagagcatggacgaatatcttgcac
aaattctgtcgcccgaccgtctacaagaactaaaaactgctcacgacgaatttgaagcac
aaagacgtggaaaacgcgctgcaatttctgcgtcagataagccggagcccaagaaagttt
tcgatattatcgaccaattcaccagcgattatcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGACCACGTTTCTGACAGATGC 12 249 20 Antisense
GATGCTCAACAGCAAACTCTGCACC 43 415 40 Antisense
CAAACTCTGCACCAGCTTATCGTGT 571 191 52 Antisense
TGTCGGCTCGTGACTCTGGAGCAAA 447 557 74 Antisense
GAATATCTTGCACAAATTCTGTCGC 516 325 127 Antisense
GAACTAAAAACTGCTCACGACGAAT 384 333 166 Antisense
GGAAAACGCGCTGCAATTTCTGCGT 631 527 208 Antisense
TTTCTGCGTCAGATAAGCCGGAGCC 47 667 224 Antisense
GATAAGCCGGAGCCCAAGAAAGTTT 277 411 235 Antisense
TCGATATTATCGACCAATTCACCAG 20 603 260 Antisense
GACCAATTCACCAGCGATTATCAGA 18 381 271 Antisense
Sequence Source Affymetrix Proprietary Database