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[177104_at]

Description Y46C8AL.D /REP_DB=WormBase Gene ID /WP=CE25292 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60598.1
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 87      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 382.2
(3)
P 		119
(-3)
P 		121.7
(-2.9)
P 		144.2
(-2.4)
P 		263
B 404.1
(3)
P 		109.2
(-2.2)
P 		136.3
(-1.7)
P 		64.7
(-3)
P 		339
C 319.5
(3)
P 		98.2
(-2.3)
P 		105.1
(-2.2)
P 		70.6
(-3)
P 		249
avr 368.6
(3) 		108.8
(-2.7) 		121
(-2.4) 		93.2
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 194.9
(0.4)
P 		128.7
(-3)
P 		142.3
(-2.3)
P 		244.4
(2.9)
P 		201.3
(0.7)
P 		246.8
(3)
P 		118
B 182.3
(-0.6)
P 		114.7
(-3)
P 		146.6
(-1.9)
P 		182
(-0.6)
P 		222.5
(0.8)
P 		284.2
(3)
P 		170
C 151.9
(-1.6)
P 		111
(-3)
P 		165.3
(-1.2)
P 		193.9
(-0.2)
P 		226.1
(0.9)
P 		288.2
(3)
P 		177
avr 176.4
(-0.7) 		118.1
(-3) 		151.4
(-1.7) 		206.8
(0.4) 		216.6
(0.8) 		273.1
(3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 139.2
(3)
P 		25.8
(-2.8)
P 		31.8
(-2.5)
P 		21.1
(-3)
P 		118
B 128.9
(3)
P 		27
(-2.3)
P 		31.6
(-2.1)
P 		13.8
(-3)
P 		115
C 105.8
(3)
P 		28.2
(-2)
P 		36.6
(-1.4)
P 		11.9
(-3)
P 		94
avr 124.6
(3) 		27
(-2.4) 		33.3
(-2) 		15.6
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 35.9
(-2.1)
P 		45.8
(-0.1)
P 		31
(-3)
P 		62
(3)
P 		60.7
(2.7)
P 		60.1
(2.6)
P 		31
B 63.4
(-0.6)
P 		38.2
(-2.8)
P 		35.6
(-3)
P 		48.2
(-1.9)
P 		90.4
(1.7)
P 		106
(3)
P 		70
C 56.3
(-0.9)
P 		33.9
(-3)
P 		42.1
(-2.2)
P 		39
(-2.5)
P 		73.2
(0.8)
P 		96.5
(3)
P 		63
avr 51.9
(-1.2) 		39.3
(-2.6) 		36.2
(-3) 		49.7
(-1.4) 		74.8
(1.5) 		87.5
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19379
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.D NCBI
Target Description Y46C8AL.D /REP_DB=WormBase Gene ID /WP=CE25292 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60598.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068038 NCBI Caenorhabditis elegans Y46C8AL.3 (Y46C8AL.3) mRNA, complete cds. 11/11 None
SNAP00000030666 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3932727:3936157:1 11/11 None
GENEFINDER00000030686 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3932727:3936232:1 11/11 None
Y46C8AL.3 ENSEMBL cdna:known chromosome:CEL140:IV:3932727:3936232:1 gene:Y46C8AL.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3932732-3936238(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46C8AL.3
Entrez Gene 189944 Entrez gene
SwissProt Q9N3X0 EMBL-EBI
WormBase CE25292 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60598 Hypothetical protein Y46C8AL.3 [Caenorhabditis elegans] ref|NP_500439.1| Y46C8AL.3 [Caenorhabditis elegans] 0.0
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 1.0E-155
blast E88656 protein F56D6.2 [imported] - Caenorhabditis elegans 1.0E-154
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 1.0E-150
blast ABA54415 Hypothetical protein F56D6.1 [Caenorhabditis elegans] 1.0E-150
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:177104_AT
ttcattgcttccaatacaccatccggcggcaccaactccagggtgctcttcgatctttct
tcgcgaacaaatggactttacgttatcgatagagattcatattttatgcaatccattgat
atgatgccattaatagaaagataccctatctacgctgccaatccggtagtaacaggtgct
gggttcaaagatctccctttattagaggtaccttccttcagaaaacacttgattatggta
gcagttcaggatcgtatcccagttaccaacgtccatcatgtaactgttcaatgggaaaat
tcattttctgaatattctggtaaattggatatgcaccctgaaacatggaacaatccttat
accaatgcgaatggtaaacgtgctaatcttgatgcttccggtttcgctatgaccgttgag
tatgtctacaatgatagtggcgaccatccgatgcaaattcggttttacagcccagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTGCTTCCAATACACCATCCG 112 689 844 Antisense
CTCTTCGATCTTTCTTCGCGAACAA 71 229 889 Antisense
TATCTACGCTGCCAATCCGGTAGTA 387 659 990 Antisense
GGTGCTGGGTTCAAAGATCTCCCTT 613 501 1018 Antisense
GAGGTACCTTCCTTCAGAAAACACT 89 401 1048 Antisense
CAGGATCGTATCCCAGTTACCAACG 212 207 1090 Antisense
ACCAACGTCCATCATGTAACTGTTC 84 83 1108 Antisense
CTAATCTTGATGCTTCCGGTTTCGC 699 225 1226 Antisense
GTTTCGCTATGACCGTTGAGTATGT 90 449 1244 Antisense
TGATAGTGGCGACCATCCGATGCAA 621 563 1275 Antisense
GCAAATTCGGTTTTACAGCCCAGAG 267 317 1296 Antisense
Sequence Source Affymetrix Proprietary Database