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[177102_at]

Description Y19D10B.G /REP_DB=WormBase Gene ID /WP=CE25230 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59430.1
Cluster 6grp_total > 70      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 11
(-3)
A 		17.1
(-1.2)
A 		13.4
(-2.3)
A 		31.1
(3)
A 		20
B 6
(-1.4)
A 		9.5
(0.1)
A 		16.5
(3)
A 		2.1
(-3)
A 		14
C 16.2
(0.9)
A 		20.2
(3)
A 		10.2
(-2.2)
A 		8.6
(-3)
A 		12
avr 11.1
(-3) 		15.6
(3) 		13.4
(0.1) 		13.9
(0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 32.5
(3)
A 		5.8
(-2.7)
A 		28.7
(2.2)
A 		24.5
(1.3)
A 		26.9
(1.8)
A 		4.2
(-3)
A 		28
B 9
(-2.2)
A 		23.1
(0.3)
A 		4.4
(-3)
A 		38.4
(3)
A 		16.7
(-0.8)
A 		5.7
(-2.8)
A 		34
C 19.9
(-0.1)
A 		9.7
(-2)
A 		32.6
(2.2)
A 		36.9
(3)
A 		4.5
(-3)
A 		5.4
(-2.8)
A 		32
avr 20.5
(0.3) 		12.9
(-1.3) 		21.9
(0.6) 		33.3
(3) 		16
(-0.7) 		5.1
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4
(-0.3)
A 		3.7
(-1.9)
A 		3.5
(-3)
A 		4.6
(3)
A 		1
B 1.9
(-0.4)
A 		2.3
(0.4)
A 		3.8
(3)
A 		0.4
(-3)
A 		3
C 5.3
(2.3)
A 		5.8
(3)
A 		3.5
(-0.1)
A 		1.4
(-3)
A 		4
avr 3.7
(2.3) 		3.9
(3) 		3.6
(2) 		2.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6
(1.2)
A 		2.1
(-2.1)
A 		6.2
(1.4)
A 		6.2
(1.4)
A 		8.1
(3)
A 		1
(-3)
A 		7
B 3.1
(-1.7)
A 		7.7
(1.4)
A 		1.1
(-3)
A 		10.2
(3)
A 		6.8
(0.8)
A 		2.1
(-2.3)
A 		9
C 7.4
(2.2)
A 		3
(-1.6)
A 		8.3
(3)
A 		7.4
(2.2)
A 		1.4
(-3)
A 		1.8
(-2.7)
A 		7
avr 5.5
(0.7) 		4.3
(-0.4) 		5.2
(0.4) 		7.9
(3) 		5.4
(0.6) 		1.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19464
Sequence Type Exemplar sequence
Representative Public ID Y19D10B.G NCBI
Target Description Y19D10B.G /REP_DB=WormBase Gene ID /WP=CE25230 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59430.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071233
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023995 ENSEMBL cdna:SNAP chromosome:CEL140:V:2311918:2313637:1 None
Y19D10B.1 ENSEMBL cdna:known chromosome:CEL140:V:2312131:2313637:1 gene:Y19D10B.1 None
GENEFINDER00000024000 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2311119:2313637:1 None
NM_071233 NCBI Caenorhabditis elegans Y19D10B.1 (Y19D10B.1) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2312130-2315330(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y19D10B.1
Entrez Gene 189492 Entrez gene
SwissProt Q966C9 EMBL-EBI
WormBase CE27595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68423 Hypothetical protein Y19D10B.1 [Caenorhabditis elegans] ref|NP_503634.1| Y19D10B.1 [Caenorhabditis elegans] 0.0
blast CAA90754 Hypothetical protein C05D12.2 [Caenorhabditis elegans] ref|NP_496433.2| C05D12.2 [Caenorhabditis elegans] 0.0
blast CAA90754 Hypothetical protein C05D12.2 [Caenorhabditis elegans] ref|NP_496433.2| C05D12.2 [Caenorhabditis elegans] 1.0E-157
blast AAF59427 Hypothetical protein Y19D10B.4 [Caenorhabditis elegans] ref|NP_503633.1| Y19D10B.4 [Caenorhabditis elegans] 1.0E-142
blast CAE59508 Hypothetical protein CBG02897 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:177102_AT
tgagatcatctgatggcaagctgctcagagaaaagttctacgcatcaacaagacctcaac
aagactgcacgtttttgtatgggttcccggcttggaaaactttgtcatgtccaccaggac
cgatcatgcaactgcacacattttactacaacggatacaatcagcaaaggatcacaccag
gatactgtattgaaagcgatcacaatgctcgggatctttctggaaacgcagaaacgctga
atgaactgactatcaatgtttccaaaattaatatggatacattaagtaaaaagaatgcga
tcggcgcatactgtactacagtttgtggggaaccaagtgacggtctcgctgttgatgtaa
tactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGATCATCTGATGGCAAGCTGCT 581 567 719 Antisense
AAGTTCTACGCATCAACAAGACCTC 282 157 751 Antisense
ACAAGACCTCAACAAGACTGCACGT 674 111 766 Antisense
AACTTTGTCATGTCCACCAGGACCG 460 139 816 Antisense
CAGGACCGATCATGCAACTGCACAC 336 209 833 Antisense
AAGCGATCACAATGCTCGGGATCTT 101 151 912 Antisense
ATGAACTGACTATCAATGTTTCCAA 593 43 959 Antisense
TGCGATCGGCGCATACTGTACTACA 551 583 1014 Antisense
CTGTACTACAGTTTGTGGGGAACCA 372 239 1029 Antisense
TGGGGAACCAAGTGACGGTCTCGCT 214 499 1044 Antisense
CGGTCTCGCTGTTGATGTAATACTC 51 245 1059 Antisense
Sequence Source Affymetrix Proprietary Database