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[177101_at]

Description Y61A9LA.K /REP_DB=WormBase Gene ID /WP=CE25524 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60843.1
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_high_8_8 > 31      6grp_highest_nonorm > 80      6grp_total > 26      4grp_total > 32      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 103
(-2.8)
P 		100.5
(-3)
A 		143.1
(0.9)
P 		165.7
(3)
A 		65
B 100.9
(-3)
P 		134.2
(-0.6)
P 		175.7
(2.5)
M 		182.9
(3)
P 		82
C 160.5
(2.6)
P 		114.6
(-2.5)
M 		164.2
(3)
P 		109.9
(-3)
P 		54
avr 121.5
(-2.3) 		116.4
(-3) 		161
(3) 		152.8
(1.9) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 300.5
(3)
P 		250.5
(1)
P 		153.5
(-3)
P 		174.5
(-2.1)
P 		188.3
(-1.6)
P 		164.8
(-2.5)
P 		147
B 297.5
(3)
P 		232.5
(-1.6)
P 		251.4
(-0.2)
P 		212.2
(-3)
P 		213.8
(-2.9)
P 		242.3
(-0.9)
P 		85
C 224.9
(1.2)
P 		273
(3)
P 		256.6
(2.4)
P 		114.5
(-3)
P 		184.6
(-0.3)
P 		199.7
(0.2)
P 		159
avr 274.3
(3) 		252
(1.8) 		220.5
(-0) 		167.1
(-3) 		195.6
(-1.4) 		202.3
(-1) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 37.5
(3)
P 		21.8
(-3)
A 		37.4
(3)
P 		24.3
(-2)
A 		16
B 32.2
(-3)
P 		33.2
(-2.3)
P 		40.7
(3)
M 		39
(1.8)
P 		9
C 53.1
(2.4)
P 		32.9
(-0.8)
M 		57.2
(3)
P 		18.5
(-3)
P 		39
avr 40.9
(1.6) 		29.3
(-2.3) 		45.1
(3) 		27.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 55.4
(-0.6)
P 		89.1
(3)
P 		33.4
(-3)
P 		44.3
(-1.8)
P 		56.8
(-0.5)
P 		40.1
(-2.3)
P 		56
B 103.5
(3)
P 		77.4
(-0.3)
P 		61.1
(-2.4)
P 		56.2
(-3)
P 		86.9
(0.9)
P 		90.3
(1.3)
P 		47
C 83.4
(3)
P 		83.3
(3)
P 		65.3
(1.2)
P 		23
(-3)
P 		59.7
(0.6)
P 		66.8
(1.4)
P 		60
avr 80.8
(2.6) 		83.3
(3) 		53.3
(-1.3) 		41.2
(-3) 		67.8
(0.8) 		65.7
(0.5) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19479
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.K NCBI
Target Description Y61A9LA.K /REP_DB=WormBase Gene ID /WP=CE25524 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60843.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071840(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071840 NCBI Caenorhabditis elegans Y61A9LA.3a (Y61A9LA.3) mRNA, complete cds. 9/11 A 
SNAP00000010097 ENSEMBL cdna:SNAP chromosome:CEL140:V:4572776:4579154:1 9/11 None
GENEFINDER00000010112 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4573814:4579850:1 11/11 None
Y61A9LA.3a ENSEMBL cdna:known chromosome:CEL140:V:4570957:4579949:1 gene:Y61A9LA.3 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171926 6/11 Cross Hyb Matching Probes A 
Y61A9LA.3c 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178848 3 1 NM_071840 173025_s_at (11), 177101_at (9)
NM_171926 173025_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4570956-4579850(+) 92.67 100.0
Public Domain and Genome References
Ensembl Y61A9LA.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60843 Hypothetical protein Y61A9LA.3a [Caenorhabditis elegans] ref|NP_504241.1| Y61A9LA.3a [Caenorhabditis elegans] 0.0
blast AAM48560 Hypothetical protein Y61A9LA.3c [Caenorhabditis elegans] ref|NP_741528.1| Y61A9LA.3c [Caenorhabditis elegans] 0.0
blast AAF60844 Hypothetical protein Y61A9LA.3b [Caenorhabditis elegans] ref|NP_504240.2| Y61A9LA.3b [Caenorhabditis elegans] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:177101_AT
cttacatcgctctctttcgagcagaagcagaagcttgtacaagacttgagatctctacta
gattcggttacgatggggatgaaggtggcggcggtggcacagatgtctcaggctcagaat
ccgattcaaggaggactgtttcaacatcagcagcagcagcagcagccgatgatgagtggt
ggtggtggattcgtttccggggttcaggtggttccaatgcaagttccaatgcaatcctac
cagatgccacaaatgcagattcatcatcaggcattcccacagccacaacagttaaacacg
actcctttgttgtcgtcatcggtaccgatgagaagggatgagttttttatcacattttac
gctacagctataactaattttccgcaggttcgacgtgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTACATCGCTCTCTTTCGAGCAGA 349 221 1849 Antisense
GAGATCTCTACTAGATTCGGTTACG 276 397 1896 Antisense
GTCTCAGGCTCAGAATCCGATTCAA 397 467 1953 Antisense
GGAGGACTGTTTCAACATCAGCAGC 1 517 1978 Antisense
GCAGCCGATGATGAGTGGTGGTGGT 416 313 2010 Antisense
GGGGTTCAGGTGGTTCCAATGCAAG 640 497 2047 Antisense
CAAGTTCCAATGCAATCCTACCAGA 235 185 2068 Antisense
GCAGATTCATCATCAGGCATTCCCA 607 311 2103 Antisense
ATTCCCACAGCCACAACAGTTAAAC 315 9 2121 Antisense
CTACAGCTATAACTAATTTTCCGCA 318 225 2210 Antisense
AATTTTCCGCAGGTTCGACGTGTGA 213 175 2224 Antisense
Sequence Source Affymetrix Proprietary Database