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[177100_at]

Description Y46C8AL.E /REP_DB=WormBase Gene ID /WP=CE25293 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60599.1
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 35      6grp_total > 24      4grp_total > 45      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 226.3
(3)
P 		123.5
(-3)
A 		130.4
(-2.6)
P 		131.4
(-2.5)
M 		103
B 173
(1.2)
P 		206.9
(3)
P 		96.4
(-2.8)
P 		91.8
(-3)
A 		115
C 212.4
(3)
P 		158.7
(-0)
P 		123.2
(-2)
P 		105.2
(-3)
P 		107
avr 203.9
(3) 		163
(0.4) 		116.7
(-2.5) 		109.5
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 406.4
(3)
P 		311.7
(1)
P 		288.3
(0.5)
P 		280.9
(0.3)
P 		122.5
(-3)
A 		178.9
(-1.8)
P 		284
B 600.7
(3)
P 		343.3
(-0.3)
P 		345.8
(-0.2)
P 		231.2
(-1.7)
P 		128.6
(-3)
P 		139.4
(-2.9)
P 		472
C 548.4
(3)
P 		337.6
(0.2)
P 		448.5
(1.7)
P 		230.6
(-1.2)
P 		93.3
(-3)
P 		160.5
(-2.1)
P 		455
avr 518.5
(3) 		330.9
(0.2) 		360.9
(0.7) 		247.6
(-1) 		114.8
(-3) 		159.6
(-2.3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 82.4
(3)
P 		26.8
(-2.3)
A 		34.1
(-1.6)
P 		19.2
(-3)
M 		63
B 55.2
(3)
P 		51.1
(2.3)
P 		22.3
(-2.5)
P 		19.6
(-3)
A 		36
C 70.3
(3)
P 		45.6
(0.2)
P 		42.9
(-0.1)
P 		17.7
(-3)
P 		53
avr 69.3
(3) 		41.2
(-0.3) 		33.1
(-1.3) 		18.8
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 74.9
(0.1)
P 		110.8
(3)
P 		62.8
(-0.9)
P 		71.2
(-0.2)
P 		37
(-3)
A 		43.5
(-2.5)
P 		74
B 209
(3)
P 		114.3
(-0.6)
P 		84
(-1.8)
P 		61.2
(-2.6)
P 		52.3
(-3)
P 		52
(-3)
P 		157
C 203.3
(3)
P 		103
(-0.5)
P 		114.2
(-0.1)
P 		46.4
(-2.4)
P 		30.2
(-3)
P 		53.7
(-2.2)
P 		173
avr 162.4
(3) 		109.4
(0.4) 		87
(-0.7) 		59.6
(-2) 		39.8
(-3) 		49.7
(-2.5) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19211
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.E NCBI
Target Description Y46C8AL.E /REP_DB=WormBase Gene ID /WP=CE25293 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60599.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068039 NCBI Caenorhabditis elegans Y46C8AL.4 (Y46C8AL.4) mRNA, complete cds. 11/11 None
SNAP00000030667 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3937458:3939839:1 10/11 None
GENEFINDER00000030677 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3937458:3939918:1 11/11 None
Y46C8AL.4 ENSEMBL cdna:known chromosome:CEL140:IV:3937458:3939918:1 gene:Y46C8AL.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3937456-3939924(+) 94.19 94.19
Public Domain and Genome References
Gene Title
Ensembl Y46C8AL.4
Entrez Gene 189945 Entrez gene
SwissProt Q9N3W9 EMBL-EBI
WormBase CE36741 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60599 Hypothetical protein Y46C8AL.4 [Caenorhabditis elegans] ref|NP_500440.2| Y46C8AL.4 [Caenorhabditis elegans] 0.0
blast AAF60602 Hypothetical protein Y46C8AL.5 [Caenorhabditis elegans] ref|NP_500442.3| Y46C8AL.5 [Caenorhabditis elegans] 0.0
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177100_AT
gtgcatcagtcgtcatggttttgtcaaaacgttatcctaacaccccggatatttcaagaa
cagtggctaaagtccgtcaatatcatggaatcgtaaactttcttgcttccaatgtcccat
tcggtggctcacagtcccaagtgctctttgatcttgcgtcacagacaaatggactctacg
gtatcgagcaagactcactgttctccaagagaattttatatatgcccctacgaacaagat
atccaatatatgccgtcaatgctaaagtatcaggagaggggtttcaagtgcttcctccaa
tgtctgtgccacaatttgatgatttcctaataatggtttcagttcaaagccatttgccag
ttagcaatgttcaatatgtaaaccttaaatggtataacccatcttttccatactcggaca
agtttgagatgcaacctgtttattgggattccaatactaattacaacacattaacaattg
gactttctcaaaatgtctataacatgaccatcgattatatctacacaaacaccgatgtcg
aaacaatgcaaatccgcttatacagttcctactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATCAGTCGTCATGGTTTTGTC 100 481 905 Antisense
TAACACCCCGGATATTTCAAGAACA 676 635 942 Antisense
GTGGCTAAAGTCCGTCAATATCATG 340 491 967 Antisense
GTAAACTTTCTTGCTTCCAATGTCC 651 461 997 Antisense
CTCACAGTCCCAAGTGCTCTTTGAT 699 227 1032 Antisense
GCTCTTTGATCTTGCGTCACAGACA 136 301 1047 Antisense
ATCGAGCAAGACTCACTGTTCTCCA 414 35 1087 Antisense
GAATTTTATATATGCCCCTACGAAC 558 321 1115 Antisense
GAGAGGGGTTTCAAGTGCTTCCTCC 678 395 1178 Antisense
GTATAACCCATCTTTTCCATACTCG 695 451 1296 Antisense
AAATCCGCTTATACAGTTCCTACTT 27 119 1454 Antisense
Sequence Source Affymetrix Proprietary Database