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[177099_at]

Description Y55F3BR.I /REP_DB=WormBase Gene ID /WP=CE22532 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59607.1
Cluster 6grp_total > 16      4grp_total > 46      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 80.7
(3)
A 		28
(-1.3)
A 		48.5
(0.4)
A 		7.5
(-3)
A 		73
B 16.7
(-1.8)
A 		46.2
(3)
A 		9.1
(-3)
A 		12.2
(-2.5)
A 		37
C 80.6
(3)
A 		7.9
(-2.9)
A 		6.8
(-3)
A 		55.7
(1)
A 		74
avr 59.3
(3) 		27.4
(-2.1) 		21.5
(-3) 		25.1
(-2.4) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 60.9
(3)
P 		36.6
(0.3)
A 		28.8
(-0.5)
A 		6
(-3)
A 		48.6
(1.7)
A 		18
(-1.7)
A 		55
B 48.1
(3)
A 		24.7
(-0.5)
A 		19.6
(-1.3)
A 		8
(-3)
A 		24.7
(-0.5)
A 		36.2
(1.2)
A 		40
C 58.5
(2.9)
A 		59.3
(3)
A 		11.2
(-2.4)
A 		29.3
(-0.4)
A 		5.7
(-3)
A 		5.7
(-3)
A 		54
avr 55.8
(3) 		40.2
(0.7) 		19.9
(-2.2) 		14.4
(-3) 		26.3
(-1.3) 		20
(-2.2) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 29.4
(3)
A 		6.1
(-1.9)
A 		12.7
(-0.5)
A 		1.1
(-3)
A 		28
B 5.3
(-0.9)
A 		11.4
(3)
A 		2.1
(-3)
A 		2.6
(-2.7)
A 		9
C 26.7
(3)
A 		2.3
(-3)
A 		2.4
(-3)
A 		9.4
(-1.3)
A 		24
avr 20.5
(3) 		6.6
(-2.2) 		5.7
(-2.5) 		4.4
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.2
(1.4)
P 		13
(2.2)
A 		6.3
(-0.8)
A 		1.5
(-3)
A 		14.7
(3)
A 		4.4
(-1.7)
A 		13
B 16.7
(3)
A 		8.2
(-0.5)
A 		4.8
(-1.9)
A 		2.1
(-3)
A 		10
(0.2)
A 		13.5
(1.7)
A 		15
C 21.7
(3)
A 		18.1
(1.9)
A 		2.9
(-2.7)
A 		5.9
(-1.8)
A 		1.9
(-3)
A 		1.9
(-3)
A 		20
avr 16.5
(3) 		13.1
(1.5) 		4.7
(-2.3) 		3.2
(-3) 		8.9
(-0.4) 		6.6
(-1.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19133
Sequence Type Exemplar sequence
Representative Public ID Y55F3BR.I NCBI
Target Description Y55F3BR.I /REP_DB=WormBase Gene ID /WP=CE22532 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59607.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067599
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039579 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:845881:848850:1 None
SNAP00000039568 ENSEMBL cdna:SNAP chromosome:CEL140:IV:847986:856835:1 None
NM_067599 NCBI Caenorhabditis elegans Y55F3BR.4 (Y55F3BR.4) mRNA, complete cds. A 
Y55F3BR.4 ENSEMBL cdna:known chromosome:CEL140:IV:845881:848850:1 gene:Y55F3BR.4 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:845886-849546(+) 88.67 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3BR.4
Entrez Gene 176910 Entrez gene
SwissProt Q8WTK7 EMBL-EBI
WormBase CE30056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68534 Hypothetical protein Y55F3BR.4 [Caenorhabditis elegans] ref|NP_500000.2| Y55F3BR.4 [Caenorhabditis elegans] 0.0
blast CAE56259 Hypothetical protein CBG23901 [Caenorhabditis briggsae] 0.0
blast CAE56259 Hypothetical protein CBG23901 [Caenorhabditis briggsae] 2.0E-35
blast AAK68534 Hypothetical protein Y55F3BR.4 [Caenorhabditis elegans] ref|NP_500000.2| Y55F3BR.4 [Caenorhabditis elegans] 2.0E-31
blast CAE68296 Hypothetical protein CBG13984 [Caenorhabditis briggsae] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500000.2 4 10-32,221-240,266-288,421-443
Y55F3BR.4 4 10-32,221-240,266-288,421-443
GENEFINDER00000039579 4 221-238,245-262,272-294,378-400
Sequence
Target Sequence 
>C. ELEGANS:177099_AT
taggttttttgggtgtagctccgcgagttttgaattcatcaaaaagttgtcaactaataa
attgtgcacaattaaatttcacacaatttctggcaatttacactctgtcagcctgcgtct
ctcctcatcccacactatttatttagctgacacagaacacagcggacccttgcgatatgt
aaatcatgttatcgattatttgatgaagaaagaacataagccgaggacgacgatagtcac
cgcatgtcctggaccgacgcccatccaacgccaaatcacgaccgccatgttgggaaatcg
aaaacgggcggcccttttctgtattttcttgtcctatctcacttttctattgatttatgc
aattattgtcataatatgtttcagtggaaaaatgattaaaaaaagtgtgggaaatgtcgt
aaaactattaaaattattaaatttttcgcctggaatcgcatcgggccggcgaatcgatcg
gacgccacgtggatctgtcatgagccgtcaattttccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGTTTTTTGGGTGTAGCTCCGCG 667 653 819 Antisense
ATTTCTGGCAATTTACACTCTGTCA 372 17 904 Antisense
TCCTCATCCCACACTATTTATTTAG 235 593 940 Antisense
ACAGCGGACCCTTGCGATATGTAAA 251 109 977 Antisense
AGGACGACGATAGTCACCGCATGTC 18 57 1042 Antisense
TTTTCTGTATTTTCTTGTCCTATCT 505 677 1133 Antisense
TTGTCCTATCTCACTTTTCTATTGA 117 709 1147 Antisense
TTTTTCGCCTGGAATCGCATCGGGC 496 669 1260 Antisense
CCGGCGAATCGATCGGACGCCACGT 705 259 1284 Antisense
GACGCCACGTGGATCTGTCATGAGC 348 381 1299 Antisense
CTGTCATGAGCCGTCAATTTTCCCA 150 239 1313 Antisense
Sequence Source Affymetrix Proprietary Database