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[177098_at]

Description Y61A9LA.C /REP_DB=WormBase Gene ID /WP=CE22676 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60835.1
Cluster 6grp_total > 17      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 3.9
(-3)
A 		17.8
(-1.2)
A 		13.6
(-1.7)
A 		50.1
(3)
A 		46
B 4.2
(-3)
A 		31.7
(3)
A 		4
(-3)
A 		25.3
(1.6)
A 		28
C 9.6
(-1.4)
A 		3.8
(-2.7)
A 		2.5
(-3)
A 		29.7
(3)
A 		27
avr 5.9
(-3) 		17.8
(-0.5) 		6.7
(-2.8) 		35
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 33.5
(3)
A 		3.3
(-2.9)
A 		5.3
(-2.5)
A 		2.7
(-3)
A 		5.1
(-2.5)
A 		29.6
(2.2)
A 		31
B 20
(-0.1)
A 		38.9
(3)
A 		28.9
(1.3)
A 		7.1
(-2.3)
A 		5
(-2.6)
A 		2.7
(-3)
A 		36
C 12.3
(0.2)
A 		3.9
(-3)
A 		4.2
(-2.9)
A 		6.2
(-2.1)
A 		19.6
(3)
A 		4.7
(-2.7)
A 		16
avr 21.9
(3) 		15.4
(0.7) 		12.8
(-0.3) 		5.3
(-3) 		9.9
(-1.3) 		12.3
(-0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-3)
A 		3.9
(-0.5)
A 		3.6
(-0.8)
A 		7.3
(3)
A 		6
B 1.3
(-2.7)
A 		7.8
(3)
A 		0.9
(-3)
A 		5.4
(0.9)
A 		7
C 3.2
(0.4)
A 		1.1
(-2.7)
A 		0.9
(-3)
A 		5
(3)
A 		4
avr 2
(-2.7) 		4.3
(0.7) 		1.8
(-3) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.2
(2.1)
A 		1.2
(-2.5)
A 		1.2
(-2.5)
A 		0.7
(-3)
A 		1.5
(-2.3)
A 		7.2
(3)
A 		7
B 7
(0)
A 		13
(3)
A 		7
(0)
A 		1.9
(-2.6)
A 		2
(-2.5)
A 		1
(-3)
A 		12
C 4.6
(1)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		6.3
(3)
A 		1.6
(-2.4)
A 		5
avr 5.9
(3) 		5.1
(2) 		3.1
(-0.7) 		1.3
(-3) 		3.3
(-0.4) 		3.3
(-0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19489
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.C NCBI
Target Description Y61A9LA.C /REP_DB=WormBase Gene ID /WP=CE22676 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60835.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y61A9LA.C
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y61A9LA.C Y61A9LA.C /REP_DB=WormBase Gene ID /WP=CE22676 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60835.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071840 11/11 Negative Strand Matching Probes A 
SNAP00000010097 11/11 Negative Strand Matching Probes None
GENEFINDER00000010112 11/11 Negative Strand Matching Probes None
Y61A9LA.3a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4578576-4578783(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177098_AT
gaatctgcatttgtggcatctggtaggattgcattggaacttgcattggaaccacctgaa
ccccggaaacgaatccaccaccaccactcatcatcggctgctgctgctgctgctgatgtt
gaaacagtcctccttgaatcggattctgagcctgagacatctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTGCATTTGTGGCATCTGGTA 348 329 25 Antisense
GTGGCATCTGGTAGGATTGCATTGG 15 493 37 Antisense
TCTGGTAGGATTGCATTGGAACTTG 172 241 43 Antisense
TTGGAACTTGCATTGGAACCACCTG 416 671 58 Antisense
ACTTGCATTGGAACCACCTGAACCC 70 101 63 Antisense
GCTGCTGATGTTGAAACAGTCCTCC 628 295 133 Antisense
GATGTTGAAACAGTCCTCCTTGAAT 495 409 139 Antisense
GTTGAAACAGTCCTCCTTGAATCGG 187 435 142 Antisense
ACAGTCCTCCTTGAATCGGATTCTG 289 103 148 Antisense
GAATCGGATTCTGAGCCTGAGACAT 585 329 160 Antisense
GGATTCTGAGCCTGAGACATCTGTG 33 509 165 Antisense
Sequence Source Affymetrix Proprietary Database