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[177097_at]

Description Y55F3BR.H /REP_DB=WormBase Gene ID /WP=CE22531 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59606.1
Cluster 6grp_total > 63      4grp_total > 0      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 30.4
(-2.2)
A 		18.2
(-3)
A 		42.9
(-1.3)
A 		105.8
(3)
P 		88
B 48.7
(0.3)
A 		26.4
(-3)
A 		55.5
(1.3)
A 		66.7
(3)
A 		40
C 46.9
(-3)
P 		59.4
(-1.7)
A 		56
(-2.1)
A 		104.6
(3)
A 		58
avr 42
(-2.2) 		34.7
(-3) 		51.5
(-1.3) 		92.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 5.1
(-3)
A 		53.6
(0.8)
A 		81.4
(3)
P 		15.6
(-2.2)
A 		61.2
(1.4)
P 		46.2
(0.2)
A 		76
B 50.4
(-1.5)
A 		46.8
(-2.7)
A 		45.9
(-3)
A 		59
(1.4)
P 		63.7
(3)
P 		52.4
(-0.8)
A 		18
C 28
(-3)
A 		56.9
(-0.7)
M 		103.9
(3)
P 		70.6
(0.4)
A 		56.2
(-0.8)
A 		63.5
(-0.2)
M 		76
avr 27.8
(-3) 		52.4
(-0) 		77.1
(3) 		48.4
(-0.5) 		60.4
(1) 		54
(0.2) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.1
(0.7)
A 		4
(-3)
A 		11.2
(0.8)
A 		15.5
(3)
P 		12
B 15.5
(3)
A 		6.5
(-3)
A 		12.9
(1.3)
A 		14.2
(2.1)
A 		9
C 15.5
(-3)
P 		17.1
(-0.6)
A 		19.5
(3)
A 		17.6
(0.2)
A 		4
avr 14
(1.4) 		9.2
(-3) 		14.5
(1.8) 		15.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.9
(-3)
A 		19.1
(3)
A 		17.7
(2.5)
P 		3.9
(-2)
A 		18.5
(2.8)
P 		11.3
(0.4)
A 		18
B 17.5
(-0.4)
A 		15.6
(-1.2)
A 		11.1
(-3)
A 		15.6
(-1.2)
P 		25.9
(3)
P 		19.5
(0.4)
A 		15
C 10.4
(-3)
A 		17.4
(-0.4)
M 		26.5
(3)
P 		14.2
(-1.6)
A 		18.2
(-0.1)
A 		21.3
(1.1)
M 		16
avr 9.6
(-3) 		17.4
(1.1) 		18.4
(1.7) 		11.2
(-2.2) 		20.9
(3) 		17.4
(1.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19362
Sequence Type Exemplar sequence
Representative Public ID Y55F3BR.H NCBI
Target Description Y55F3BR.H /REP_DB=WormBase Gene ID /WP=CE22531 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59606.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y55F3BR.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y55F3BR.H Y55F3BR.H /REP_DB=WormBase Gene ID /WP=CE22531 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59606.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:832441-832834(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177097_AT
gaagcaacttcatcgattgtgccagagaagatccattccgatgctcgtaatttttccttg
gttacaagttcctcacaagtccgttcacccttgtatttgaaaagcttggatgctgacgga
gaagataattctacagttgagaaacaaataacacattcgaagaaagtagctgatacggaa
ttagacagaagcctggaatgtttgaaagagaacgagaacgacgtaaagacaaacggtgaa
gtggaactttccgctgttgaggatgctttaattcaagttgtaccagaagtctccgagaac
caaaatcctcgaaaaatcggaccctacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCAACTTCATCGATTGTGCCAG 280 341 43 Antisense
AGAGAAGATCCATTCCGATGCTCGT 599 67 66 Antisense
CGATGCTCGTAATTTTTCCTTGGTT 429 249 81 Antisense
TGGTTACAAGTTCCTCACAAGTCCG 131 543 101 Antisense
CAAGTCCGTTCACCCTTGTATTTGA 144 155 118 Antisense
AAAGCTTGGATGCTGACGGAGAAGA 301 123 143 Antisense
AACGGTGAAGTGGAACTTTCCGCTG 482 143 274 Antisense
AACTTTCCGCTGTTGAGGATGCTTT 615 139 287 Antisense
GATGCTTTAATTCAAGTTGTACCAG 252 397 304 Antisense
GTTGTACCAGAAGTCTCCGAGAACC 452 437 319 Antisense
TCCTCGAAAAATCGGACCCTACGAT 199 593 348 Antisense
Sequence Source Affymetrix Proprietary Database