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[177096_at]

Description Y71F9AM.D /REP_DB=WormBase Gene ID /WP=CE25562 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60866.1
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 82      6grp_total > 86      4grp_total > 59      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 282.2
(-2)
P 		367.8
(3)
P 		329.6
(0.8)
P 		265.2
(-3)
P 		103
B 319.7
(3)
P 		295.6
(1.1)
P 		308.1
(2.1)
P 		243.8
(-3)
P 		76
C 293.1
(0.3)
P 		336.5
(1.8)
P 		372.8
(3)
P 		193.2
(-3)
P 		180
avr 298.3
(0.8) 		333.3
(2.8) 		336.8
(3) 		234.1
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 258.9
(-3)
P 		286.9
(-2.5)
P 		264.8
(-2.9)
P 		433.8
(-0.1)
P 		337.3
(-1.7)
P 		626.9
(3)
P 		368
B 366.3
(1)
P 		321.7
(-2.9)
P 		321.1
(-3)
P 		348.6
(-0.5)
P 		378.5
(2.1)
P 		388.3
(3)
P 		67
C 380
(2.1)
P 		229.9
(-3)
P 		408.1
(3)
P 		381.6
(2.1)
P 		396.2
(2.6)
P 		375.7
(1.9)
P 		178
avr 335.1
(-1.2) 		279.5
(-3) 		331.3
(-1.3) 		388
(0.5) 		370.7
(-0) 		463.6
(3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 102.8
(3)
P 		79.8
(0.8)
P 		86.2
(1.4)
P 		38.8
(-3)
P 		64
B 102
(3)
P 		73
(-0.5)
P 		71.4
(-0.7)
P 		51.9
(-3)
P 		50
C 97
(1)
P 		96.8
(1)
P 		129.9
(3)
P 		32.6
(-3)
P 		97
avr 100.6
(3) 		83.2
(1.2) 		95.8
(2.5) 		41.1
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 47.7
(-3)
P 		102
(0.1)
P 		57.7
(-2.4)
P 		110
(0.6)
P 		101.8
(0.1)
P 		152.6
(3)
P 		105
B 127.5
(0.9)
P 		107.1
(-0.7)
P 		78
(-3)
P 		92.3
(-1.9)
P 		153.8
(3)
P 		144.8
(2.3)
P 		76
C 140.8
(3)
P 		70.1
(-3)
P 		103.9
(-0.1)
P 		76.7
(-2.4)
P 		128.2
(1.9)
P 		125.8
(1.7)
P 		71
avr 105.3
(-0.5) 		93.1
(-1.7) 		79.9
(-3) 		93
(-1.7) 		127.9
(1.7) 		141.1
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18742
Sequence Type Exemplar sequence
Representative Public ID Y71F9AM.D NCBI
Target Description Y71F9AM.D /REP_DB=WormBase Gene ID /WP=CE25562 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60866.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026635(10), NM_001026636(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026635 NCBI Caenorhabditis elegans Y71F9AM.4a (Y71F9AM.4) mRNA, complete cds. 10/11 None
NM_001026636 NCBI Caenorhabditis elegans Y71F9AM.4b (Y71F9AM.4) mRNA, complete cds. 10/11 None
SNAP00000002741 ENSEMBL cdna:SNAP chromosome:CEL140:I:2941113:2944424:1 10/11 None
Y71F9AM.4a ENSEMBL cdna:known chromosome:CEL140:I:2931462:2947153:1 gene:Y71F9AM.4 10/11 A 
Y71F9AM.4b ENSEMBL cdna:known chromosome:CEL140:I:2936043:2944611:1 gene:Y71F9AM.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2942129-2944424(+) 98.49 100.0
Public Domain and Genome References
Ensembl Y71F9AM.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81182 Hypothetical protein Y71F9AM.4a [Caenorhabditis elegans] ref|NP_001021806.1| Y71F9AM.4a [Caenorhabditis elegans] 0.0
blast AAO21418 Hypothetical protein Y71F9AM.4b [Caenorhabditis elegans] ref|NP_001021807.1| Y71F9AM.4b [Caenorhabditis elegans] 0.0
blast CAE60581 Hypothetical protein CBG04215 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007265 EMBL-EBI Sec34-like protein 7.2E-24
Sequence
Target Sequence 
>C. ELEGANS:177096_AT
aaggcggtattggcgtattccactctctggctcgtgacatgctcttctcttgcatagact
cactcgaaacagcatccaaagcaatcatggaatctccagctcctgcaaaaggatggagca
agaagctcgatgctcatctattcgtcgtcaagcatttgctcattctacgtgagcaaactg
ctccataccgtcagaatgtgttgaggtcggattctctcaacacaaaggacttttccatcg
acttttccaagtttacaaatgttttgtttgattccaaatcgaaatggttcgagttgagca
ctgacaatgcgcttttggagctcatcactacagttccaatagaaatgcgtgaacaggagg
gagattcacgtcgtgttctcgatcaacagctccgagcctctacctttcgtcttgctcacg
aagcttcactgctcatgattcgagatctagctgattggattgaaattgccgaggatgagc
gtatgaaagaaggattccagttgtcagggcatccgaaactagccgccggcgtgcttaaag
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCGGTATTGGCGTATTCCACTC 188 161 113 Antisense
GACATGCTCTTCTCTTGCATAGACT 515 369 148 Antisense
TAGACTCACTCGAAACAGCATCCAA 391 653 167 Antisense
CAATCATGGAATCTCCAGCTCCTGC 456 181 194 Antisense
GATGCTCATCTATTCGTCGTCAAGC 45 415 241 Antisense
CAAACTGCTCCATACCGTCAGAATG 389 191 286 Antisense
GCTTTTGGAGCTCATCACTACAGTT 194 305 423 Antisense
TACCTTTCGTCTTGCTCACGAAGCT 659 649 513 Antisense
GAAGCTTCACTGCTCATGATTCGAG 679 341 532 Antisense
GTCAGGGCATCCGAAACTAGCCGCC 37 465 615 Antisense
ACTAGCCGCCGGCGTGCTTAAAGAT 114 101 630 Antisense
Sequence Source Affymetrix Proprietary Database