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[177095_at]

Description Y55F3BR.A /REP_DB=WormBase Gene ID /WP=CE22534 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59599.1
Cluster 6grp_total > 59      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 38.5
(-1.9)
A 		21.6
(-2.9)
A 		19.7
(-3)
A 		120.1
(3)
P 		100
B 44.2
(1.1)
P 		6.9
(-3)
A 		29.3
(-0.5)
A 		61.2
(3)
A 		54
C 51.2
(-1)
A 		12.4
(-3)
A 		29.2
(-2.1)
A 		128.7
(3)
P 		116
avr 44.6
(-0.9) 		13.6
(-3) 		26.1
(-2.2) 		103.3
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 50.5
(3)
A 		8.9
(-2.4)
A 		5.4
(-2.9)
A 		4.3
(-3)
A 		6.2
(-2.8)
A 		33.3
(0.8)
A 		46
B 42.4
(0.6)
P 		20.5
(-1.7)
A 		46.5
(1.1)
A 		8.3
(-3)
A 		28.7
(-0.8)
A 		64.7
(3)
M 		56
C 4.6
(-3)
A 		39.8
(2.3)
A 		11.3
(-2)
A 		14.7
(-1.5)
A 		33.5
(1.4)
A 		44.1
(3)
P 		40
avr 32.5
(0.7) 		23.1
(-0.8) 		21.1
(-1.1) 		9.1
(-3) 		22.8
(-0.9) 		47.4
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14
(1.3)
A 		4.7
(-3)
A 		5.1
(-2.8)
A 		17.6
(3)
P 		13
B 14.1
(3)
P 		1.7
(-3)
A 		6.8
(-0.5)
A 		13
(2.5)
A 		12
C 16.9
(1.4)
A 		3.6
(-3)
A 		10.2
(-0.8)
A 		21.7
(3)
P 		18
avr 15
(2) 		3.3
(-3) 		7.4
(-1.3) 		17.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 9.3
(3)
A 		3.2
(-1.5)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		1.9
(-2.4)
A 		8.1
(2.1)
A 		8
B 14.7
(0.4)
P 		6.8
(-1.7)
A 		11.3
(-0.5)
A 		2.2
(-3)
A 		11.7
(-0.4)
A 		24.1
(3)
M 		22
C 1.7
(-3)
A 		12.1
(1.8)
A 		2.9
(-2.5)
A 		2.9
(-2.5)
A 		10.8
(1.2)
A 		14.8
(3)
P 		13
avr 8.6
(-0.1) 		7.4
(-0.7) 		5.1
(-1.7) 		2.1
(-3) 		8.1
(-0.4) 		15.7
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19276
Sequence Type Exemplar sequence
Representative Public ID Y55F3BR.A NCBI
Target Description Y55F3BR.A /REP_DB=WormBase Gene ID /WP=CE22534 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59599.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028344, NM_001028343
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y55F3BR.8b ENSEMBL cdna:known chromosome:CEL140:IV:849406:854378:-1 gene:Y55F3BR.8 None
GENEFINDER00000039575 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:849286:854374:-1 None
SNAP00000039569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:849406:857001:-1 None
NM_001028343 NCBI Caenorhabditis elegans Y55F3BR.8a (Y55F3BR.8) mRNA, complete cds. None
NM_001028344 NCBI Caenorhabditis elegans Y55F3BR.8b (Y55F3BR.8) mRNA, complete cds. None
Y55F3BR.8a ENSEMBL cdna:known chromosome:CEL140:IV:849291:854780:-1 gene:Y55F3BR.8 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:854059-856570(-) 72.87 85.64
Public Domain and Genome References
Ensembl Y55F3BR.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59601 Hypothetical protein Y55F3BR.8a [Caenorhabditis elegans] ref|NP_001023514.1| Y55F3BR.8a [Caenorhabditis elegans] 0.0
blast AAV34782 Hypothetical protein Y55F3BR.8b [Caenorhabditis elegans] ref|NP_001023515.1| Y55F3BR.8b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.36
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Pfam IPR002110 EMBL-EBI Ankyrin 0.36
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Pfam IPR002110 EMBL-EBI Ankyrin 0.36
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Sequence
Target Sequence 
>C. ELEGANS:177095_AT
tggcctagttcggcagacttttacattcaaaaattcgtgggaagccagaagcgcgtggct
gctccaaacactttaattttaaaactcttttaccccctgagagagtgtaggaaagtgaga
gacggagacagaaagcgctacaacgacgctccgatattgcgggttgcatgttgtttagcg
tatttcagcggtaaaatgtcaaatacaccggtgcaggagactgagggaccggtctacgtg
gcatattccatggaagatatgctaaaatcgcccagagacttgtataaaagcgtcaaggaa
gtggcgaaattcgtgaactcggccgaaggaaaaagcatgtcggctcgttttaagaaattc
ggaacgccacgagaagcgatggactttctcgcgtacggagatgcgccgacgacaccgaaa
accgtgccgcccgtcgccccaactgagccaaattcaccgttttccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCTAGTTCGGCAGACTTTTACA 644 543 28 Antisense
GGAAGCCAGAAGCGCGTGGCTGCTC 313 529 67 Antisense
TGGCTGCTCCAAACACTTTAATTTT 269 545 83 Antisense
TCTTTTACCCCCTGAGAGAGTGTAG 624 613 113 Antisense
AGAAAGCGCTACAACGACGCTCCGA 103 73 157 Antisense
GACGCTCCGATATTGCGGGTTGCAT 214 381 172 Antisense
GGTTGCATGTTGTTTAGCGTATTTC 370 507 189 Antisense
ACCGGTCTACGTGGCATATTCCATG 284 87 255 Antisense
GCTAAAATCGCCCAGAGACTTGTAT 601 301 288 Antisense
GAAGCGATGGACTTTCTCGCGTACG 437 341 400 Antisense
TGAGCCAAATTCACCGTTTTCCGGT 382 539 471 Antisense
Sequence Source Affymetrix Proprietary Database