[Home] | [Total List]

[177094_s_at]

Description Y46C8AL.A /REP_DB=WormBase Gene ID /WP=CE21962 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60596.1
Cluster 6grp_total > 78      4grp_total > 23      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 35.3
(-0.7)
A 		4.6
(-3)
A 		12.8
(-2.4)
A 		83.5
(3)
A 		79
B 38.4
(3)
A 		1.6
(-3)
A 		1.3
(-3)
A 		17.9
(-0.3)
A 		37
C 38.4
(3)
A 		3.4
(-2.9)
A 		2.7
(-3)
A 		3.1
(-2.9)
A 		36
avr 37.4
(3) 		3.2
(-3) 		5.6
(-2.6) 		34.8
(2.5) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 14
(-1.2)
A 		3.8
(-2.7)
A 		1.5
(-3)
A 		24.6
(0.4)
A 		12
(-1.5)
A 		42.7
(3)
P 		41
B 2.8
(-2.9)
A 		1.8
(-3)
A 		4.9
(-2.7)
A 		2.3
(-2.9)
A 		53.1
(2.2)
A 		61.1
(3)
P 		59
C 4.3
(-2.9)
A 		2.8
(-3)
A 		2.2
(-3)
A 		4.5
(-2.9)
A 		27.2
(-1.7)
A 		113.4
(3)
P 		111
avr 7
(-2.6) 		2.8
(-3) 		2.9
(-3) 		10.5
(-2.3) 		30.8
(-0.6) 		72.4
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.8
(3)
A 		1
(-3)
A 		3.4
(-1.8)
A 		12.2
(2.7)
A 		12
B 12.3
(3)
A 		0.4
(-3)
A 		0.3
(-3)
A 		3.8
(-1.3)
A 		12
C 12.7
(3)
A 		1
(-2.8)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		12
avr 12.6
(3) 		0.8
(-3) 		1.5
(-2.6) 		5.5
(-0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.6
(-1.6)
A 		1.3
(-2.4)
A 		0.3
(-3)
A 		6.2
(0.5)
A 		3.6
(-1)
A 		10.4
(3)
P 		10
B 1
(-2.9)
A 		0.6
(-3)
A 		1.2
(-2.8)
A 		0.6
(-3)
A 		21.6
(2.7)
A 		22.8
(3)
P 		22
C 1.6
(-2.8)
A 		0.9
(-3)
A 		0.6
(-3)
A 		0.9
(-3)
A 		8.8
(-1.7)
A 		38
(3)
P 		37
avr 1.7
(-2.7) 		0.9
(-2.9) 		0.7
(-3) 		2.6
(-2.5) 		11.3
(-0.2) 		23.7
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177094_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19125
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.A NCBI
Target Description Y46C8AL.A /REP_DB=WormBase Gene ID /WP=CE21962 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60596.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068044 NCBI Caenorhabditis elegans Y46C8AL.1 (Y46C8AL.1) mRNA, complete cds. 11/11 A 
SNAP00000030673 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3954078:3956184:-1 11/11 None
GENEFINDER00000030681 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3954078:3956184:-1 11/11 None
Y46C8AL.1 ENSEMBL cdna:known chromosome:CEL140:IV:3953929:3956200:-1 gene:Y46C8AL.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3954083-3956190(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46C8AL.1
Entrez Gene 177153 Entrez gene
SwissProt Q9N3W2 EMBL-EBI
WormBase CE21962 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60596 Hypothetical protein Y46C8AL.1 [Caenorhabditis elegans] ref|NP_500445.1| Y46C8AL.1 [Caenorhabditis elegans] 0.0
blast AAC24390 Hypothetical protein F47C12.4 [Caenorhabditis elegans] ref|NP_500450.1| F47C12.4 [Caenorhabditis elegans] 0.0
blast CAE71799 Hypothetical protein CBG18810 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500445.1 1 5-27
Y46C8AL.1 1 5-27
SNAP00000030673 1 5-27
GENEFINDER00000030681 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:177094_S_AT
ctgcattggctctcgaaagacaaactcacgtttgcagacgcggccgcagcatgcgaggcg
aaaggagcaaacttggctggtatcaattcgctgaaagaagcagaacagttaggaaatcat
gttgtcggagctaacttgaacaacgagcagttctggcttggagcgcaacgtaggaccgaa
tgcttggaaaataacgactggaaacctccttgcacacgtgacaaaatcttcgaatggatg
aacaacgtggcgacggatttccgttcagagtggtggaagaaaaataacaatctccattct
ccaaatccatcaggcactggtcaacgatgcttgtcttttgcctttggggatctgtggtgg
tcatacaaaggacatacaggatttttggatgacattgagtgccataccgagctgagatat
ttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCATTGGCTCTCGAAAGACAAAC 541 235 1276 Antisense
GGCTCTCGAAAGACAAACTCACGTT 322 537 1283 Antisense
ACAAACTCACGTTTGCAGACGCGGC 131 111 1295 Antisense
CGGCCGCAGCATGCGAGGCGAAAGG 614 241 1316 Antisense
GCGAGGCGAAAGGAGCAAACTTGGC 618 289 1328 Antisense
GCAAACTTGGCTGGTATCAATTCGC 709 317 1342 Antisense
GAATGGATGAACAACGTGGCGACGG 557 331 1507 Antisense
CCTTTGGGGATCTGTGGTGGTCATA 290 259 1616 Antisense
GGATCTGTGGTGGTCATACAAAGGA 218 509 1623 Antisense
TGACATTGAGTGCCATACCGAGCTG 338 565 1665 Antisense
GCCATACCGAGCTGAGATATTTCTG 705 279 1676 Antisense
Sequence Source Affymetrix Proprietary Database