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[177092_at]

Description Y46C8AL.K /REP_DB=WormBase Gene ID /WP=CE21960 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60605.1
Cluster 6grp_total > 18      4grp_total > 47      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 366.7
(3)
P 		112.1
(-2.5)
A 		87.3
(-3)
A 		189.2
(-0.8)
A 		279
B 401.8
(3)
P 		109.9
(-2.1)
A 		81.5
(-2.6)
A 		59.2
(-3)
A 		343
C 407.1
(3)
P 		130.2
(-2.1)
A 		99.9
(-2.6)
A 		80.2
(-3)
A 		327
avr 391.9
(3) 		117.4
(-2.4) 		89.6
(-3) 		109.5
(-2.6) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 181.5
(3)
A 		71.9
(-0.9)
A 		63.9
(-1.2)
A 		43.8
(-1.9)
A 		30.4
(-2.4)
A 		13.3
(-3)
A 		168
B 143.3
(3)
A 		63.1
(-0.7)
A 		11.8
(-3)
A 		46.3
(-1.4)
A 		48.9
(-1.3)
A 		30.9
(-2.1)
A 		132
C 152.2
(3)
M 		69.6
(-0.5)
A 		17.9
(-2.7)
A 		10.9
(-3)
A 		27
(-2.3)
A 		50.8
(-1.3)
A 		141
avr 159
(3) 		68.2
(-1.3) 		31.2
(-3) 		33.7
(-2.9) 		35.4
(-2.8) 		31.7
(-3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 133.5
(3)
P 		24.3
(-2.9)
A 		22.8
(-3)
A 		27.7
(-2.7)
A 		111
B 128.1
(3)
P 		27.2
(-2.2)
A 		18.9
(-2.7)
A 		12.6
(-3)
A 		116
C 134.8
(3)
P 		37.4
(-1.8)
A 		34.8
(-1.9)
A 		13.5
(-3)
A 		121
avr 132.1
(3) 		29.6
(-2.4) 		25.5
(-2.6) 		17.9
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 33.5
(3)
A 		25.6
(1.4)
A 		13.9
(-0.9)
A 		11.1
(-1.4)
A 		9.2
(-1.8)
A 		3.2
(-3)
A 		30
B 49.8
(3)
A 		21
(-0.7)
A 		2.9
(-3)
A 		12.3
(-1.8)
A 		19.9
(-0.8)
A 		11.5
(-1.9)
A 		47
C 56.4
(3)
M 		21.2
(-0.9)
A 		4.6
(-2.7)
A 		2.2
(-3)
A 		8.7
(-2.3)
A 		17
(-1.4)
A 		54
avr 46.6
(3) 		22.6
(-0.6) 		7.1
(-3) 		8.5
(-2.8) 		12.6
(-2.2) 		10.6
(-2.5) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19229
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.K NCBI
Target Description Y46C8AL.K /REP_DB=WormBase Gene ID /WP=CE21960 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60605.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068045 NCBI Caenorhabditis elegans Y46C8AL.8 (Y46C8AL.8) mRNA, complete cds. 11/11 None
SNAP00000030672 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3953411:3959626:1 10/11 None
GENEFINDER00000030678 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3957024:3959626:1 11/11 None
Y46C8AL.8 ENSEMBL cdna:known chromosome:CEL140:IV:3957024:3959482:1 gene:Y46C8AL.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3957029-3959488(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46C8AL.8
Entrez Gene 189948 Entrez gene
SwissProt Q9N3W1 EMBL-EBI
WormBase CE21960 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60605 Hypothetical protein Y46C8AL.8 [Caenorhabditis elegans] ref|NP_500446.1| Y46C8AL.8 [Caenorhabditis elegans] 0.0
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 1.0E-152
blast E88656 protein F56D6.2 [imported] - Caenorhabditis elegans 1.0E-149
blast AAF60602 Hypothetical protein Y46C8AL.5 [Caenorhabditis elegans] ref|NP_500442.3| Y46C8AL.5 [Caenorhabditis elegans] 1.0E-148
blast AAF60605 Hypothetical protein Y46C8AL.8 [Caenorhabditis elegans] ref|NP_500446.1| Y46C8AL.8 [Caenorhabditis elegans] 1.0E-142
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 1.0E-141
blast E88656 protein F56D6.2 [imported] - Caenorhabditis elegans 1.0E-139
blast AAF60602 Hypothetical protein Y46C8AL.5 [Caenorhabditis elegans] ref|NP_500442.3| Y46C8AL.5 [Caenorhabditis elegans] 2.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030672 2 41-63,70-92
Sequence
Target Sequence 
>C. ELEGANS:177092_AT
cgattccagcaactgccaagtcgggggtccacaaacggttcttttcgcctactccaacga
cttgaatccattcatcgtgatggatacactgcaacgttcgtctcttgattctcaaaacgt
aagttttgcgatttcgagatttgatttaccacagcctgaagacattgcttatttcactac
ttataatcaagcgatgtcatacgtttctttgcataagccaaatgtttcattaggatttaa
tgatactacgagagggagcaatgtgttggatgtgattgataccattgactatattccaac
acgcgaaagatatccgatatacgctgtcaccccaagagtgtcaggcgagggatctcaaat
acttcctccaatgaccgtgctagtccatgctagctatttgctgtcgttatcaattcaaag
tcatgttccaactaataatgtcaaagatgttgagttgtactggcgtaatccatcatctac
caacacgggctattttggaatgccagtcgcgagctggggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTCCAGCAACTGCCAAGTCGGG 523 247 501 Antisense
TTCGCCTACTCCAACGACTTGAATC 514 697 544 Antisense
TACACTGCAACGTTCGTCTCTTGAT 487 643 585 Antisense
GAGATTTGATTTACCACAGCCTGAA 465 397 636 Antisense
AGCGATGTCATACGTTTCTTTGCAT 524 81 690 Antisense
CTGTCACCCCAAGAGTGTCAGGCGA 498 237 824 Antisense
GATCTCAAATACTTCCTCCAATGAC 545 419 851 Antisense
CTCCAATGACCGTGCTAGTCCATGC 101 233 866 Antisense
GTCCATGCTAGCTATTTGCTGTCGT 544 477 883 Antisense
GTACTGGCGTAATCCATCATCTACC 396 457 957 Antisense
GGAATGCCAGTCGCGAGCTGGGGAT 327 533 997 Antisense
Sequence Source Affymetrix Proprietary Database