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[177090_at]

Description Y61A9LA.H /REP_DB=WormBase Gene ID /WP=CE22682 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60840.1
Cluster 6grp_total > 90      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 4.1
(-2.2)
A 		2.9
(-2.6)
A 		2
(-3)
A 		17.2
(3)
A 		15
B 4.1
(-2.1)
A 		7.6
(-0.6)
A 		1.9
(-3)
A 		16
(3)
A 		14
C 9.1
(-1.4)
A 		27.3
(2.9)
A 		2.5
(-3)
A 		27.6
(3)
A 		25
avr 5.8
(-1.8) 		12.6
(0.5) 		2.1
(-3) 		20.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 21.8
(1.4)
A 		29.4
(3)
A 		4.7
(-2.2)
A 		22
(1.4)
A 		1
(-3)
A 		4.5
(-2.3)
A 		28
B 19.8
(3)
A 		2.3
(-2.7)
A 		2.7
(-2.5)
A 		18.3
(2.5)
A 		2.4
(-2.6)
A 		1.3
(-3)
A 		19
C 1.3
(-3)
A 		2.4
(-2.6)
A 		8
(-0.5)
A 		17.3
(3)
A 		2.8
(-2.4)
A 		7.1
(-0.8)
A 		16
avr 14.3
(1.3) 		11.4
(0.3) 		5.1
(-1.9) 		19.2
(3) 		2.1
(-3) 		4.3
(-2.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.5
(0)
A 		0.6
(-2.7)
A 		0.5
(-3)
A 		2.5
(3)
A 		2
B 1.3
(-1.2)
A 		1.9
(0)
A 		0.4
(-3)
A 		3.4
(3)
A 		3
C 3
(-1.2)
A 		7.8
(3)
A 		0.9
(-3)
A 		4.7
(0.3)
A 		7
avr 1.9
(-0.3) 		3.4
(2.8) 		0.6
(-3) 		3.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4
(-0.8)
A 		10.4
(3)
A 		1
(-2.6)
A 		5.6
(0.1)
A 		0.3
(-3)
A 		1.1
(-2.5)
A 		10
B 6.9
(3)
A 		0.8
(-2.7)
A 		0.7
(-2.8)
A 		4.9
(1.1)
A 		1
(-2.5)
A 		0.5
(-3)
A 		6
C 0.5
(-3)
A 		0.7
(-2.6)
A 		2
(0)
A 		3.5
(3)
A 		0.9
(-2.2)
A 		2.4
(0.8)
A 		3
avr 3.8
(1.7) 		4
(2) 		1.2
(-2.3) 		4.7
(3) 		0.7
(-3) 		1.3
(-2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19495
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.H NCBI
Target Description Y61A9LA.H /REP_DB=WormBase Gene ID /WP=CE22682 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60840.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071835 NCBI Caenorhabditis elegans Y61A9LA.5 (Y61A9LA.5) mRNA, complete cds. 11/11 None
Y61A9LA.5 ENSEMBL cdna:known chromosome:CEL140:V:4553686:4556905:1 gene:Y61A9LA.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010092 3/11 Cross Hyb Matching Probes None
GENEFINDER00000010123 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4553685-4556441(+) 95.38 100.0
chrIII:3454329-3454904(+) 55.91 55.91
chrI:11908951-11909529(-) 55.59 55.59
Public Domain and Genome References
Ensembl Y61A9LA.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504236 Y61A9LA.5 [Caenorhabditis elegans] 0.0
blast AAR12983 Hypothetical protein Y61A9LA.12 [Caenorhabditis elegans] 8.0E-93
blast CAA87099 Hypothetical protein C34C12.1 [Caenorhabditis elegans] ref|NP_497711.1| C34C12.1 [Caenorhabditis elegans] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 1.4E-23
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 4.2E-6
Sequence
Target Sequence 
>C. ELEGANS:177090_AT
acttcagcgatgtggtgagaaatacctacaaatacaccccagagtcgggggccgcgccga
aggtgcggttcacggctggtttactataaaacgaccaacgacggatctggaaactacagt
actccttaatgcaacggcaacgaaaaatcagccgaaaatgagcctgttcaacaaattttt
cggaggcatgaagcaagaagcttcgattactctacaagaatctattcaaaaacttcggga
aacagaagatattcttgagaagagacaagaattcttgaagaaacaaattgacgacgaaaa
gcataatgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCAGCGATGTGGTGAGAAATAC 507 101 507 Antisense
GAGAAATACCTACAAATACACCCCA 566 361 523 Antisense
ACCTACAAATACACCCCAGAGTCGG 24 3 530 Antisense
TTCACGGCTGGTTTACTATAAAACG 309 463 575 Antisense
TAAAACGACCAACGACGGATCTGGA 423 637 593 Antisense
GACCAACGACGGATCTGGAAACTAC 35 359 599 Antisense
AACTACAGTACTCCTTAATGCAACG 39 141 618 Antisense
GTACTCCTTAATGCAACGGCAACGA 85 459 625 Antisense
AAGCAAGAAGCTTCGATTACTCTAC 267 151 697 Antisense
GAAGCTTCGATTACTCTACAAGAAT 210 341 703 Antisense
ATTGACGACGAAAAGCATAATGCCG 202 3 793 Antisense
Sequence Source Affymetrix Proprietary Database