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[177089_at]

Description Y55F3BR.G /REP_DB=WormBase Gene ID /WP=CE22540 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59605.1
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 36      6grp_highest_nonorm > 81      6grp_total > 81      4grp_total > 36      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 160.4
(-0.5)
P 		201.2
(3)
A 		131.3
(-3)
A 		183.4
(1.5)
P 		70
B 164.8
(-3)
P 		197.5
(-0.3)
M 		214.9
(1.1)
P 		238.3
(3)
P 		74
C 235.9
(3)
P 		229.7
(2.5)
P 		163.6
(-3)
P 		164.6
(-2.9)
P 		72
avr 187
(-0.4) 		209.5
(3) 		169.9
(-3) 		195.4
(0.9) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 153.1
(-2.7)
P 		262.8
(1.7)
P 		146.1
(-3)
P 		286.3
(2.6)
P 		296.6
(3)
P 		187.1
(-1.4)
P 		151
B 216.7
(-0.4)
P 		300.2
(3)
P 		261.8
(1.5)
P 		261.7
(1.4)
P 		241.3
(0.6)
P 		151.3
(-3)
P 		149
C 200.1
(-3)
P 		279.8
(2.3)
P 		234.2
(-0.7)
P 		290
(3)
P 		251.6
(0.4)
P 		241.6
(-0.2)
P 		90
avr 190
(-3) 		280.9
(3) 		214
(-1.4) 		279.3
(2.9) 		263.2
(1.8) 		193.3
(-2.8) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 58.4
(3)
P 		43.7
(0.2)
A 		34.3
(-1.6)
A 		26.9
(-3)
P 		32
B 52.6
(3)
P 		48.8
(-3)
M 		49.8
(-1.4)
P 		50.8
(0.2)
P 		4
C 78.1
(3)
P 		66
(1.6)
P 		57
(0.5)
P 		27.8
(-3)
P 		50
avr 63
(3) 		52.8
(0.8) 		47
(-0.5) 		35.2
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 28.2
(-3)
P 		93.5
(3)
P 		31.8
(-2.7)
P 		72.6
(1.1)
P 		89.5
(2.6)
P 		45.6
(-1.4)
P 		65
B 75.4
(-0.4)
P 		99.9
(3)
P 		63.6
(-2)
P 		69.3
(-1.2)
P 		98
(2.7)
P 		56.4
(-3)
P 		44
C 74.2
(0.5)
P 		85.4
(3)
P 		59.6
(-2.7)
P 		58.3
(-3)
P 		81.4
(2.1)
P 		80.9
(2)
P 		27
avr 59.3
(-1.9) 		92.9
(3) 		51.7
(-3) 		66.7
(-0.8) 		89.6
(2.5) 		61
(-1.6) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177089_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19313
Sequence Type Exemplar sequence
Representative Public ID Y55F3BR.G NCBI
Target Description Y55F3BR.G /REP_DB=WormBase Gene ID /WP=CE22540 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59605.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067596 NCBI Caenorhabditis elegans Y55F3BR.5 (Y55F3BR.5) mRNA, complete cds. 11/11 None
SNAP00000039564 ENSEMBL cdna:SNAP chromosome:CEL140:IV:830433:831896:-1 11/11 None
GENEFINDER00000039574 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:830391:831896:-1 11/11 None
Y55F3BR.5 ENSEMBL cdna:known chromosome:CEL140:IV:830391:831896:-1 gene:Y55F3BR.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:830396-831902(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3BR.5
Entrez Gene 190316 Entrez gene
SwissProt Q9N352 EMBL-EBI
WormBase CE22540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59605 Hypothetical protein Y55F3BR.5 [Caenorhabditis elegans] ref|NP_499997.1| Y55F3BR.5 [Caenorhabditis elegans] 1.0E-138
blast AAF59605 Hypothetical protein Y55F3BR.5 [Caenorhabditis elegans] ref|NP_499997.1| Y55F3BR.5 [Caenorhabditis elegans] 1.0E-130
blast CAE68301 Hypothetical protein CBG13992 [Caenorhabditis briggsae] 7.0E-85
blast CAE68301 Hypothetical protein CBG13992 [Caenorhabditis briggsae] 1.0E-78
Sequence
Target Sequence 
>C. ELEGANS:177089_AT
gtgacatcgagttcttcattcatcaagtatcagacaatcaaattatttgggaccgccgga
attctctaaactttgacggaaatttggttcacgcgactttcgacaaaatcgaaatttgct
gccagtttttggcacggaaaaatggagaaaacgcttcccgactgtggactgagcttgcaa
gcgagtataagcgtgaaaaagcccgaatcgagcaactaccaagcggaatttattcggaag
aattcgaaattcgctttccttttatgcaacaaatgtggtttctggaaatcgaagcctccg
aattaaaagaagccgattcgaatagccttgaagagacaattgtcaattttgcccggcaaa
aatccataaatgatgccccgtccccctcttcatccctttccgcgccaattgagcacctaa
actcatcgataaatcgcctgatcgctgtaatcgataaaaaatccgaagataccactaaac
gacaaattcccgccaaatattctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACATCGAGTTCTTCATTCATCA 669 481 179 Antisense
TATTTGGGACCGCCGGAATTCTCTA 369 661 222 Antisense
ATTTGGTTCACGCGACTTTCGACAA 454 15 260 Antisense
AATGGAGAAAACGCTTCCCGACTGT 438 161 319 Antisense
CCGACTGTGGACTGAGCTTGCAAGC 677 261 336 Antisense
AGCCCGAATCGAGCAACTACCAAGC 116 49 378 Antisense
AATTCGCTTTCCTTTTATGCAACAA 635 177 426 Antisense
ACAATTGTCAATTTTGCCCGGCAAA 36 115 514 Antisense
CCGCGCCAATTGAGCACCTAAACTC 510 261 578 Antisense
GATAAATCGCCTGATCGCTGTAATC 616 423 606 Antisense
GACAAATTCCCGCCAAATATTCTGA 144 367 659 Antisense
Sequence Source Affymetrix Proprietary Database